Cucumis sativus (cucumber): 101215673
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Entry
101215673 CDS
T02486
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101215673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101215673
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101215673
U7-dependent histone pre-mRNA processing factors
101215673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
101215673
NCBI-ProteinID:
XP_004140773
UniProt:
A0A0A0LBF9
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Position
3:12902111..12911064
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AA seq
738 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI
SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDID
SAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKE
RHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAG
RVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRNNAFL
LKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGT
LARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKEEQSKASHGA
DNDTGDPMIIDASSNVAPDVGSSHGGAYRDILIDGFVPPSTGVAPMFPFYENTSAWDDFG
EVINPDDYVIKDEDMDQAAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLH
YMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETID
VTSDLCAYKVQLSEKLMSNVLFKKLGDYEITWLDAEVGKTENGTLSLLPLSKAPAPHKSV
LVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPL
CEDYYKIRELLYSQFYLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggaacctctgttcaggtgacacctctttgtggagtgtacaatgagaatcctctatcc
tatttggtctccgttgatgacttcaacttccttatcgactgtggttggaacgaccacttc
gatcccgctcttcttcaacctttatccagggtggcatccacgattgatgcagttttgata
tcacatcctgatacacttcacctaggggcccttccttatgccatgaaacaacttggactt
tctgctccagttttttccactgaacccgtgtaccgattgggtctccttacaatgtatgac
cagttcatcgcaaggaagcaagtgtcagagtttgatctatttacactggatgatatcgat
tctgctttccaagttgtaaccagactaacatactcccagaatcatcatctttcaggcaaa
ggagagggaatagttattgcacctcatgtggctgggcatctattggggggaactctatgg
aagataacgaaggatggagaagatgttatatatgctgttgacttcaaccaccgcaaggaa
aggcatctgaatggaaccattctagagtcatttgtgcgacctgctgtattgataactgat
gcttataatgctctaaataatcagccttacagacggcagaaggacaaagaatttggagat
actattcagaagaccttaagagctaatggaaatgtcttacttcctgttgatactgctggg
cgcgtgctggagcttattcaaattttggaatggtactgggaagaggaaagtttaaattat
cccattttctttttaacttacgttgcatccagcacaattgattatatcaagagtttccta
gagtggatgagtgatacaatagcgaagtcttttgaacacacacggaacaacgcttttctt
ctcaaacatgttacccttctaatcaacaaaagtgaacttgataatgctccagatggtcca
aaggttgttctagcatcaatggctagtttggaagctggttactcacatgacatttttgtt
gactgggcaatggatgccaaaaacctcgtccttttttctgaaagaggccagtttggcact
ttggcccgcatgcttcaagctgatccacctcccaaagctgttaaggtaactgtgtctaag
agagtccctttgactggagatgagcttattgcttatgaagaagagcaaaacaggaaaaag
gaagaagctcttaaggctagtttgcttaaagaggaacaatctaaagcatctcatggagct
gataatgatactggcgatccaatgatcatcgatgctagcagtaatgtagcaccagatgtc
gggagttcacatggaggtgcatacagagacatattaattgatggttttgttcctccttca
accggtgttgctccaatgtttcccttttatgaaaatacctctgcgtgggatgattttggt
gaagtaatcaatcccgacgattatgtaattaaggatgaagacatggaccaagcagcaatg
catgctggtggggacgttgatggaaaactagacgaaactgctgctaacttgattttagat
atgaagccttcgaaagttgtatctaatgaattgacagtccaagttaaatgctcattgcat
tacatggattttgaaggtcgttcagatgggagatcaattaaatcaatactctcccacgtt
gctccattgaagcttgttttggtgcatggaaccgcagaggcaaccgagcatcttaaacaa
cattgccttaaaaatgtctgcccccatgtctatgcccctcaaattgaagaaacgattgat
gttacttctgatttgtgtgcgtataaggtacaactttcagagaagctgatgagtaatgtg
ctgtttaagaagctaggagattatgaaatcacttggctcgatgctgaagtagggaagact
gagaatggaacgttgtctttacttcctctctccaaggctcctgcgcctcataaatctgtt
cttgttggtgatttaaaaatggccgacttcaaacaatttcttgccagcaagggaatacag
gttgaatttgctgggggtgctttgagatgtggcgagtatgtcaccctacgcaaggttaca
gatgcaagccaaaagggcggtggttctggtacacagcaagttgtcattgaagggccttta
tgtgaggattattataaaattcgggaacttttgtattcacaattttatttgctataa
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