Cucumis sativus (cucumber): 101215674
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Entry
101215674 CDS
T02486
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101215674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101215674
03009 Ribosome biogenesis [BR:
csv03009
]
101215674
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101215674
Spliceosome [BR:
csv03041
]
Complex A
U1 snRNP components
U1 related factors
101215674
Complex B
101215674
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
Pre-60S particles
Helicases
101215674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101215674
NCBI-ProteinID:
XP_011652287
LinkDB
All DBs
Position
3:34597587..34603684
Genome browser
AA seq
778 aa
AA seq
DB search
MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLNSS
IVSISSSVQIQKPSSGHSYNNNLNENNDKYGRGSHAPKQEVARGETFQSHDTSNGTPNTG
HGGAPLKGHRPSDAGNGISAESYRQRHEITFSGDNVPAPFSSFEATGFPPEILREVHNAG
FSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRIRNDPKLGPTVLVLS
PTRELATQIQDEAVKFGKSSRISCACLYGGAPKGLQLRDIDRGVDIVVATPGRLNDILEM
RRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIASDLL
VNPIQVNIGNVDELVANKSITQHIEALAPLEKHRRLEQILRSQEPGSKVIIFCSTKKMCD
QLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVATDVAARGLDIKDIRVVINY
DFPSGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKYASDLIKILEGANQRVPPELRDMAS
RSYGMAKFRRWGSGSDGRDGGRGGRNDSNSGGRGGRGMSSFSSSKPERGGGRGYDFDSRE
RYDSGYNRGRSRSPPRGGVGGDRTKSWNRDHSPPGWSPDRSGPARDRSPVRSFHQAMMER
SNIPPRGVENASKNGSGSWNQVRSRSCSRSRSPNRFNRAPPARERSPVLSFHKTMLDKGN
SGGGTHDNPDNNNKDSRRSPRDRMDGGGYEKSSRTSYPREEDEEGMIPQDEQGKGASD
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggcggctactgctactgctgtctctgttggtccacgatatgcaccagaagatccaacc
cttcccaaaccatggagaggtttagttgatgggaaaacggggtatctttacttctggaat
ccggaaactaatgtcacccaatacgagagacctgtggctgctgctcctcttaattcatca
atagtgtccataagttcttccgttcaaattcaaaagccatcatcgggccactcttataat
aataatttgaatgaaaacaacgataagtacggaagaggttcccatgcacccaaacaagag
gttgcaaggggtgaaacctttcaatcacatgatacctcaaatggaacacctaatactggg
catggaggagcaccgttgaaaggacacagaccatcagatgcaggaaatggtatatctgct
gagtcttatcgtcaacgacatgaaataactttttcgggagataatgtgccggcaccattc
tcatcatttgaagccaccggtttcccacctgagattcttagggaggtacataatgcaggg
ttctctgctccaactccaattcaggcgcagtcatggccaattgctcttcaaagtagagat
attgtagctattgctaaaacaggctcagggaaaactcttgggtacttaataccaggtttt
attcatctcaagcgcattcgaaatgatcctaagctagggccgactgttttggtgttgtcg
cccacaagggaattggcaacacagattcaagatgaagctgtgaagtttgggaagtcatca
agaatttcttgtgcgtgtctatatggaggagcaccaaagggcctacaattgagggatata
gatcgtggagtagatattgtagttgcaactcctggtcgtttgaatgatattcttgagatg
aggagaatcagtctccatcaggtttcttatcttgtactagatgaggctgatcgcatgctg
gacatgggtttcgaaccccagattagaaagatcgtaaaggaggtacctgctcgccggcag
actttaatgtacacagctacttggccaaaagaagttcggaaaattgcatcagatctgctt
gttaatcctattcaagtcaatatcggcaatgtcgacgagcttgttgcgaacaagtccatc
actcagcatattgaagcattggcaccattggaaaagcacaggcgattggagcagatattg
agatctcaagaacctggatcaaaagtgataattttctgttctacaaagaaaatgtgtgat
cagcttgctcgcaatcttacacgccaatttggagctgctgcaattcatggagacaaatcc
cagggggagagagatcacgttcttggtcaatttcgcacgggaaggactcctgtgcttgta
gctactgatgttgcagctcgaggattggatattaaagacatcagggttgttatcaattat
gatttcccatccggagtggaggattatgtccataggattggtcgaactggaagagcaggt
gctaccggcattgcttacaccttcttcggtgagcaggatgcaaagtatgcttcagatctg
attaaaattttggagggagctaaccagcgagtcccaccagaacttcgtgatatggcttct
cgaagttatggaatggccaagtttagacgttggggttctggctctgatggtcgtgatggt
ggtcgaggtgggcgcaatgattcaaactctggtgggaggggtggacggggaatgtcttcc
ttttcttcctccaagccagaacgaggtggtggccgagggtatgacttcgactcacgagag
aggtatgattctggatacaatcgtggtcgcagtcggagtcctccaaggggtggtgtggga
ggtgaccgaaccaaaagttggaaccgtgaccacagtcctccaggctggagccccgacagg
tctggaccagcacgtgaccgctctccagttcggagttttcaccaagccatgatggaacgt
agtaacattccacctcgaggagttgaaaatgctagtaagaatggttctggaagctggaac
caagttcgaagtcggagctgtagccgaagccgtagtcctaaccgttttaaccgcgctcct
ccagcacgagagcgttctccagttttgagtttccataaaacaatgttggacaagggaaac
tctggaggaggcacacacgacaacccagataataacaataaggattcaagaagatcaccc
cgtgatagaatggacgggggaggatacgaaaagagttctcgcacctcataccctcgagaa
gaagacgaggaaggcatgatccctcaagatgaacaaggtaagggagcatcagactga
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