Cucumis sativus (cucumber): 101216466
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Entry
101216466 CDS
T02486
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101216466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101216466
03041 Spliceosome [BR:
csv03041
]
101216466
03036 Chromosome and associated proteins [BR:
csv03036
]
101216466
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101216466
Spliceosome [BR:
csv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101216466
Complex B
101216466
Complex C
U2 SnRNP specific factors
101216466
Chromosome and associated proteins [BR:
csv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
101216466
TFTC complex
101216466
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
101216466
NCBI-ProteinID:
XP_031744689
LinkDB
All DBs
Position
7:3265944..3282148
Genome browser
AA seq
1375 aa
AA seq
DB search
MAVSEEECSSAKSRSSSSTSSSTYYLAKCVLRGSVVLQVLYGHIRSPSSLDVVFGKETSI
ELVVIGEDGVVQSVCEQAVFGTIKDMAILPWNERFRPSYTQMLGKDLLIVISDSGKLSFL
TFCNKMHRFLPMTHIQLSNPGNSRNQIGRMLASDSSGCFIAASAYENRLALFSTSISAGS
DIVDKRITYPPDSEGDSVAPRSMQKASICGTIWSMCFISKDRGHLTQDNNPILLFFLCRR
GAILNELLLLGWNIREQTIHVICQFLEDGPLAYEVVEVPQSYGFALLFRVGDALLMDLRD
VHSPCCVYRIGLHFPPNVEQNFIEESYRVQDADDEGLFNVAACALLELRDYDPMCIDSDD
GSLNTNQNHVCSWSWEPGNNRNRRMIFCMDTGDLFMIEMNFDSDGLKVNQSACLYKGQPY
KALLWVEGGYLAALVEMGDGMVLKLENGRLIYANXIQNIAPILDMSVVDKHDEKQDQMFA
CCGMAPEGSLRIIRNGISVENLLRTSPIYQGITSIWTIKMKRSDTYHSYLVLSFVEETRV
LSVGLSFIDVTDSVGFQSDTCTLACGLLDDGLVIQIHQNAVRLCLPTKIAHSEGIELSSP
ACTSWFPDNIGISLGAVGHNVIVVSTSNPCFLFILGVRKVSXYDYEIYEKQYLRLQYELS
CISIPEKHFAKKESNFPMNSVENSIMSTLLNEVSCDTIIVIGTHRPSVEILSFVPSIGLT
VLASGTISLMNILGNAVSGCIPXDVRLVLVDRFYVLTGLRNGMLLRFEWPHTATMNSSDM
PHTVVPFLLSCSDSFSKEFHNADILEKHEDEIPSCLQLIAIRRIGITPVFLVPLTDRLDS
DIIALSDRPWLLHSARQSFIYFHIISTSTHVTPVCSADCPSGLLFVAESSLHLVEMVHTK
RLNVQKFHLXGHPRKVLYHSESKLLLVMRTQLINDTSSSDICCVDPLSGSILSSHKLEIG
ETGKSMELVRNGNEQVLVVGTSLSSGPAIMASGEAESTKGRLIVLCLEHVQNSDTGSMTF
CSKAGLSSLQASPFREIVGYATEQLSSSSLCSSPDDASSDGIKLEETEAWQLRVVYSTSL
PGMVLAICPYLDRYFLASAGNAFYVCGFPNDSFQRVKRFAVGRTRFMITSLTAHVNRIAV
GDCRDGILFFSYQEDAKKLEQIYSDPSQRLVADCTLLDVDTAVVSDRKGSIAILSCSDRL
EDNASPECNLTLNCAYYMGEIAMTLRKGSFSYKLPADDLLRGCAVPGSDFDSSHNTIIAS
TLLGSIVIFTPLSRDEYELLEAVQAKLAVHPLTSPILGNDHYEYRSRENPIGVPKILDGD
ILTQFLELTSMQQELVLSSSVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcggaggaggaatgttcatctgcgaaatcgcgatcttcatcttccacttct
agttccacgtattacttggctaagtgcgttctcagaggcagtgttgttctccaggttctt
tacggtcacatacgctctccgagctctctcgatgtcgtctttggcaaggagacatccata
gagttggtggttataggcgaagatggcgttgtacaatctgtatgtgagcaggccgtattt
ggcactattaaagatatggccatcctaccatggaatgagaggtttcgaccctcatataca
cagatgctgggcaaggatcttctcattgtaatttccgattctggaaagctttcatttctc
acattttgcaataaaatgcacaggtttcttcctatgacacatattcaactttccaatcct
ggaaattcaaggaatcagatagggagaatgctggcctcagattcgagtggatgctttatt
gctgctagtgcatatgaaaatcgtttggctttattctccacttcaatatctgctggtagc
gacatcgttgataagagaataacttatcctcctgatagtgaaggagattcagttgctcct
cgaagcatgcagaaagccagtatatgtggtaccatatggagtatgtgctttatttcaaaa
gatcgtgggcaccttacacaggacaacaatcctatactgctgttcttcttatgcaggaga
ggagcgattttgaatgaactgctattattgggatggaatattagggaacagactatacat
gttatatgtcaatttttggaagatggacccctggcttacgaggttgttgaagttcctcaa
tcttatggatttgcacttctatttagggttggtgatgctctcttgatggatcttagagat
gttcacagtccctgttgtgtttatagaattggcttacacttcccacccaacgtggaacaa
aactttattgaagagtcatatagagtacaagatgcagatgacgaaggactatttaatgta
gctgcatgtgctctgctggaactgagggattatgatcccatgtgcattgacagcgatgat
ggcagtttgaatacaaaccagaatcacgtgtgctcttggagttgggaaccgggcaataat
agaaaccgaaggatgattttctgtatggatacaggagatctcttcatgatagaaatgaat
tttgactctgatggcctgaaagtgaatcagtctgcttgtctttacaaaggtcaaccatac
aaggctcttctgtgggttgaaggtggatatttggctgcattagtggaaatgggggatgga
atggtcctgaaattagaaaatggaagactgatatatgcaaatnccatccagaacattgcc
ccaattttggatatgtcagttgttgacaagcatgatgagaaacaagaccaaatgtttgca
tgctgtggaatggcacctgaagggtctttaaggattattcgaaatggtatcagtgtagaa
aatttgttgaggacatctccaatttaccaaggtataacgagtatatggaccattaaaatg
aaacgaagcgatacttatcattcatatttggtactgtcatttgttgaagagacccgagtt
ctatcagttggcttgagttttattgatgtcactgattcagttggtttccagtctgacacc
tgtactttggcatgtggtcttttagatgatggtctagtgattcaaatacatcaaaatgca
gtaaggttatgtttacccaccaagatcgcccattctgaaggcattgagttatcttctcca
gcttgcacatcttggtttccagataatattggtataagcttgggagcagttggacataat
gtgattgttgtttccacttctaacccatgcttcttatttatccttggagttcgaaaggtt
tctnggtatgactatgaaatatatgaaaagcaatatttgagattgcagtatgaattgtca
tgcatttcaattcctgaaaaacattttgccaaaaaagaatcaaattttcctatgaactca
gttgaaaatagcattatgtccactcttttgaatgaggtgagttgtgatactattattgtt
ataggcacccataggccttccgtggagattttatcttttgttccctctataggccttacg
gtccttgcttctggaactatttcattgatgaatatattagggaatgctgttagtggatgc
attcccnaagatgtaagacttgttttagttgacaggttttatgttcttacggggctcagg
aatggaatgttgcttcgttttgagtggcctcatactgctacgatgaactcatctgatatg
cctcacactgttgttccctttttattgtcttgttccgattctttcagcaaggaatttcat
aatgctgatatattggagaagcacgaggatgaaattccatcttgtcttcaattgattgct
attcgtcgtatagggatcactcctgtttttctggttcctttgacggataggctggattct
gatataattgctctaagtgataggccgtggttattacatagtgctagacagtctttcata
tacttccatatcatttcaacgtcaacacacgtaactcctgtgtgttctgctgactgccct
agtggactactatttgttgcggaaagcagtctacatttggtagagatggtgcataccaag
agattgaatgtgcagaaatttcaccttngggggcacccaaggaaggtcctatatcacagt
gagagcaaattactgcttgtgatgaggactcaattgattaatgatacatcttcatctgac
atatgctgtgtagaccctcttagtgggtcaattttatcatctcacaagcttgaaattgga
gagacaggaaaatccatggagttggtgaggaatggaaacgaacaagttcttgtggttgga
acaagcttgtcttctggtcctgccataatggccagtggtgaagctgaaagtaccaagggt
cggttgattgtcctctgccttgaacacgttcaaaactcagatactggctcaatgactttt
tgttcaaaggcaggattatcatctcttcaagcctcaccgtttcgtgaaattgttggatat
gctacagaacagttatcaagcagtagtctttgtagcagtccagatgatgcaagctctgat
ggtataaaacttgaggaaacagaagcatggcaattacgggtggtttattcaacttccttg
cctggaatggttcttgctatctgcccttatcttgatcgatatttcttggcatctgctggt
aatgctttttatgtatgtggtttcccaaacgatagtttccaaagagtgaaaaggtttgca
gttgggaggacacgttttatgataacatctcttacggctcatgttaatagaattgctgtt
ggcgattgtcgtgatggtattctatttttctcttatcaagaggatgctaaaaagctggag
caaatttattctgatccttcacagaggctagttgctgattgtactcttttggatgttgac
actgctgttgtttcagatcgtaagggaagcattgctatcttatcatgttctgatcgttta
gaagataatgcaagtccggaatgcaacttaacgctgaactgtgcttattacatgggtgaa
attgctatgaccttgaggaaaggatctttttcatacaaacttccagctgatgatttgttg
agaggttgtgctgtccctggctctgattttgactcatcacacaacactattattgccagt
acactattagggagcattgtaatcttcactcctttgtcgagggatgagtacgaacttttg
gaggctgttcaggctaaacttgcagttcatccactaacttcccccattttggggaatgat
cattatgagtatcgtagccgtgaaaatcctattggagtaccaaagatacttgatggtgat
atcctaactcagttcttggaacttacaagcatgcaacaagagttggtattatcgtcatct
gttggctcactaagtgcagttaaaccgagctcaaagtcaatgccggcgtctatccccatc
aatcaggttgtgcagctgcttgaaagaattcactacgcactcaattag
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