Cucumis sativus (cucumber): 101216510
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Entry
101216510 CDS
T02486
Name
(RefSeq) nuclear-pore anchor isoform X1
KO
K09291
nucleoprotein TPR
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101216510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101216510
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101216510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
101216510
NCBI-ProteinID:
XP_011659056
LinkDB
All DBs
Position
7:12058506..12119390
Genome browser
AA seq
2075 aa
AA seq
DB search
MAHLFISDEEFSRHSDDAAFLAEKADAFIQGLRSELETVRAQADAASITAEQTCSLLDQK
FLSLSAEFSDLQSQNAQLQTTLELRLSELAEVKSQKHQLNLLSIGKDGEIERLNTELSEL
HKSKRQLMELIEHKDLEIGEKDSTIKSYLDKIVNLSETAAQREARISEVDMELVRSRADF
ARLTQEKELIERHNVWLNDELTAKVGSVIDLRRLHSDTEAELSAKLRDVERQLDECASSL
KWNKDSVKELEMKLTSAQEELCSSRRMASENEERLCAEISTVNKLVELYKESSEEWSKKA
TELEGVVKALETHLNQIESDYKEKLVKEESQRIHLEEEATNLKVKLEKCEAEIELSRKKN
ELTLFPLGSFSPDVLINPKENSDVVGGNHNFGPMIPVGVSGTALAASLLRDGWSLAKMYA
KYQETVDALRHEQMGRKDAEAVLQKVLYELEDKAEVILEERAEHERMIESYSLLNQKLQN
SISEQEILEKTLQELKADLKRHERDYLLIHRENIDLSRQVTILLKECRDVQLRCGYVGND
VPKNISNPTSFEINMESDADRVISEYLLTFKDINGLVEQNVQLRSLVRKLSVQLQDTELD
FKEKLEAELKRKTQEAASRVEAVLQKVEEQGQMIESLHASVAMYKRLYEEEHKRNLHLPL
SAGVALDFGRKELEFVSKDSQEARKADHEQAAKRIRYLEEELEKSRSEVNFVRAERNKFE
LEIGFAKEKLDSFMKEFEQQRVEMNGVLARNVEFSQLIVDYQRKLREVSESLHSADEQSR
KLSIEVSVLKSEKDLLSNAEKRAQDEIQKLSERLFRVQTSLDTIRSVEEVHEEVRVVERR
KLEEHAKQLEREWAEAKKELQEERDNVRTLTLDREKTLKNAMSHVEEMGKELANALHATA
AAEARAAVAEAKLSDLEKKICASDNQVIELDDRSELSSRPPNQVATDLRRAEAEIQKFKE
EAQACKDHMLQYKSIAQVNEEAVKQMECAHETFKIEAEKMKKSLEVELLQLRERIAELEN
ESVLKSQEIASAASLKEEAIASSLAEIKNLNEENTAKTSKIQEMEIQISYLKEDLERQQQ
KWRTAQANYERQVILQSETIQELTKTSQALAAVQEEAAELRKLAEAYKTENEELKAKWEG
GRVALEDLKNKADKAYSELNEQNKILHAQLEAFHIRLVEKDQKLAGVPSESNTTEIVGDA
GIQSVVSYLRRTKEIAEVEISLLKKDKLRLQSQLESALKAVESAQTSLNVERQSSKALLL
TEEEIKSLQLQVREMNLLRESNIQLREENKHNFEECQKLREESRKSKSEIEKFEGMLKMR
QMEVESCKMEIESQNVEKTHLESRVLELLERSKNIDYEDYNRVKDDVQRMQMELNEKDAE
IAKVKMLISERQESISQLEQDLSNCRSEVKEREKRLNDIQQMEANLRADMEKQKKYISQF
KRKLEIVSKEKDELGKENQALLRQLEDTKQVNTVGKRSTGDSTGEQAIEEKDTKIQILEK
HLERLREELKREKDDSRTEKSRRLKIEKAIKDSYTKVEQEKSKILNDLEKHKGNLKQVSE
ELRQSKSNLSEQDAFPHPLSVIGLDENASTYVLAAENFEKTVQSVLTDLGVQNVPSEAPL
ATDALVQTSTGLDVPLQTPDVAPLAPVTTNFPAKALEEREKKVNLSKAKVETRRAGRKLV
RPRLGKPEGGPQGDIDMLASELPSNEIRRVTSGKSETEGESTTSAHQLARKRVASSTSEL
HEHPIIHGEISSEVAAPVMKRAKGCDTLADEVGGPSSSTLESLKTQPPLEEASDICEFPH
GSNEEAVDVEKEIEIAGEKTDRPKELSDGSMSHDEIHTDRKEMLDENLDRQIGAEVSDDG
LKDQAEPDNWHLTSEIGSEREEGELAPEVTELEGGNIIESVEIGEDHNEPIATPDASPSR
VDDDTLAVTAMEIGEINSPEIQNEDKNDEGDMVDETSEIQDKSTDCNQIDLESDQAVETT
SVATENTPSTPPDVNDSKQGSPTVAKRSSPVSSSTSTTINLQERAKERAMLRQAGVVSSL
DRRPVRTLRGRGGRIERGGRGQRSGRGPPGDSNRS
NT seq
6228 nt
NT seq
+upstream
nt +downstream
nt
atggcccatttattcatctccgacgaggagttctctcgtcactctgacgacgctgctttt
ttggccgagaaggccgatgccttcatccaaggtctccgcagtgagctcgagaccgtcaga
gctcaagctgatgctgcttcaatcaccgcggagcagacttgttctcttcttgaccagaag
ttcctctctctttcagctgagttctctgacctccagtctcagaatgcacagcttcaaacg
accctcgaactcaggctctccgagcttgcagaagtcaagtcccaaaaacaccaactcaat
ttactttccattgggaaggatggtgagatagagaggttaaatacagagttatctgaactg
cataaatcaaaaagacagttgatggagcttatcgagcataaggacttagaaattggtgaa
aaagattccactataaagagttatcttgacaagattgtcaatttgtccgagacagctgct
caaagagaagcccgtataagcgaggtcgacatggagttggtgcgctcccgagctgacttc
gctcgtcttacacaggaaaaagaacttatcgagaggcataacgtgtggcttaacgatgaa
ttaactgctaaagtaggcagtgtcattgacctgcgtaggcttcattctgatactgaggct
gaactgtctgcaaaacttagagatgttgagaggcagttggatgaatgcgctagctcctta
aaatggaacaaggatagtgtgaaagaacttgagatgaagctaacatctgcacaggaggaa
ttgtgttcgtcaagaagaatggcttcagaaaatgaggaacgtctttgtgctgaaatatca
acagtcaataagcttgttgaactttacaaagaaagttctgaggagtggtctaagaaggca
acagaactggagggtgtcgtaaaagccttggagacacatttgaaccaaattgagagtgat
tataaagaaaagcttgtaaaggaagaatctcaaaggattcatttggaagaggaggctaca
aatttgaaagtgaaactggaaaagtgtgaagcggagattgaacttagtaggaaaaagaat
gaactcactctttttccccttggcagcttttctccagatgttttgataaacccgaaggaa
aatagtgatgtggttggtgggaatcacaacttcggccccatgattcccgtaggtgtttct
gggacagcattagctgcttcgcttctgcgtgatggttggagtttagccaaaatgtatgcc
aagtaccaggaaactgtggatgctttgcggcatgagcagatgggaaggaaagatgccgag
gcagttctgcagaaggtgctatatgaacttgaagataaagcagaagtcattttggaggaa
agagcggaacatgagagaatgatcgagtcatattccctgctaaaccaaaaattgcaaaat
tctatatctgaacaggaaatcctggagaaaactctccaagaattgaaggctgatttgaag
agacatgagcgtgattacttgttaattcatagagagaacatcgacctttcaagacaggtt
acaattcttctgaaggaatgtcgagatgtgcaacttcgctgtggatatgtaggaaatgat
gttcccaagaatatttcaaatcctacatcctttgagatcaatatggaatctgatgctgat
agagttatttctgaatatcttttaaccttcaaggacataaatggattagttgagcagaat
gtccagcttagaagccttgtacgtaaactttcagtgcagcttcaagatacagagcttgat
ttcaaggagaaattggaggctgaactgaaaaggaaaactcaagaagctgcatctagagtt
gaagcagtgttacaaaaagttgaagaacaggggcagatgattgagtctcttcatgcttcc
gttgccatgtacaaaaggctatatgaagaggagcataagcgtaatttgcatcttccccta
tctgctggagttgctctagattttggtcgaaaggaacttgagtttgtttctaaagattct
caggaggccagaaaagctgatcacgagcaggctgctaaacgaataagatatctcgaggaa
gaactcgaaaaatctagaagtgaggtaaattttgttagagctgaacgtaacaagtttgaa
ctggagatcggttttgcaaaagaaaaactggatagtttcatgaaggaatttgagcaacag
agagtagaaatgaatggcgtgttagctcgaaatgtagagttctcacaacttattgtagac
taccaaagaaaactgcgggaagtttcagaatccctgcacagtgctgatgaacagtcccgg
aaattgagtattgaggtgtctgtcttaaagtctgaaaaggacttgttatcaaatgctgaa
aagagagcacaggatgaaattcaaaaactgtctgaaagattattccgggtgcagacatct
cttgatactattcgaagtgttgaagaagttcatgaggaggttagggttgtagaaaggaga
aagctggaggaacatgctaagcaacttgagagggaatgggctgaagcaaagaaagagttg
caagaagagagggacaatgttcgaactcttactcttgatcgtgagaagactttaaagaat
gcaatgagtcatgttgaagagatggggaaggaacttgcaaatgcattacatgccactgca
gctgctgaggcaagagctgctgttgctgaggctaaactgtctgatcttgagaagaaaatt
tgtgcttcagataatcaggtcattgagttggatgatagaagtgaacttagttcccgtcct
ccaaatcaggttgcaacagatttgcgtagagcagaggcagagattcagaaatttaaagaa
gaagcacaagcttgtaaagatcacatgctacagtacaagagcattgctcaggtaaatgaa
gaagctgtgaaacagatggaatgtgctcatgaaactttcaagattgaggctgagaaaatg
aagaaatcattagaagttgaacttcttcagcttagagagaggattgctgaactcgaaaat
gaatctgttttaaaatctcaagaaatagcttctgctgctagtttgaaggaagaggctatt
gcgtcttctctggcagaaattaaaaatcttaatgaagagaacactgcaaaaacgtctaag
attcaggaaatggaaattcagatatcttatttaaaagaagatttggaaagacaacagcaa
aaatggcgtactgctcaagctaattatgagagacaggttattctccagtcagagacaatt
caggagctaacaaaaacttcccaagctttggctgctgtacaagaggaggcagctgagctt
cgtaaattagctgaagcttacaaaacagaaaatgaagaactaaaggccaaatgggaaggt
gggagggtagcccttgaggatttaaagaataaggctgacaaggcttactctgaactcaat
gaacagaataaaattctgcatgctcaacttgaggctttccacattcgattggtggagaag
gatcaaaagttggctggagttccatctgaaagtaatactactgaaattgtcggggatgct
ggtattcagagtgtggttagttacctcagaagaacgaaagaaattgctgaagtagagatc
tccttgctaaagaaggacaagttgagattgcagtcacaattagaaagtgctcttaaagcc
gtggagagtgcacaaacttcacttaatgtcgagcgtcaaagctcaaaagcattattgtta
accgaggaggaaattaagtctttacaacttcaggttagggagatgaacttgcttcgtgaa
agcaatattcaattgcgagaagagaataagcacaattttgaggaatgccagaaactacgt
gaagaatctagaaagtctaaaagtgaaatagagaagtttgagggcatgctgaagatgaga
caaatggaggtggaatcctgtaaaatggaaattgaatcgcagaatgtggagaagactcac
cttgaaagcagagtcttggagttgcttgaaagatctaaaaatatagattatgaagattac
aatcgtgtgaaggacgatgttcaaagaatgcagatggagctgaatgagaaagatgcagaa
attgcaaaagtcaaaatgttaatctctgaaagacaggaatcaatatctcagttggagcaa
gacctttctaattgcagatctgaagtgaaggaaagggagaaaaggttgaatgatattcaa
cagatggaggccaatctgagggctgatatggagaaacagaagaagtacatttctcagttt
aagagaaaacttgaaattgtctcaaaggagaaggatgaattgggcaaagagaatcaagct
cttttgaggcagttggaagacactaaacaagtgaatactgtcggtaaaaggtccactgga
gattcaactggtgagcaggccatagaagaaaaggacactaaaattcagattcttgagaaa
catctggagaggcttagagaagaactaaaaagagagaaggatgatagtcgtacagagaaa
agcaggcgtttgaaaattgagaaggccataaaggattcatatactaaagtcgagcaggaa
aaatcaaagattttaaatgacttggagaagcataagggaaacttgaagcaggtttctgaa
gaacttagacaatctaaaagcaatctttcggagcaggatgctttccctcatcccctttca
gtgattggtttggacgagaatgcttctacctacgttttagctgctgaaaattttgagaag
actgtgcagtcagttttgactgatcttggagttcaaaatgttccttctgaggctcctctg
gccacagatgctttggtacaaactagcacaggtcttgatgttcctctccaaacgcctgat
gtggcacctttggctcctgtaacaactaactttcctgccaaagcattggaagaacgggaa
aagaaagttaatttatccaaggcaaaagtagaaacacgtagagcagggcggaagttggtt
cgacctcgtcttggaaaaccagaaggagggcctcagggtgatatagacatgttagcatca
gaactaccaagcaatgaaatcaggcgtgtaacttctggaaaatcagaaacggaaggtgaa
tcaactacatcagcccatcagctggctcgcaaacgtgtagcttcatcaacttctgaattg
catgaacatccaattattcatggggagatcagttctgaagtggcagctcctgtcatgaag
agggctaaggggtgcgataccttggctgatgaagttggtggtccatcctcttcaactttg
gaaagtctcaaaactcagccacctttagaagaagcttctgatatttgtgagtttcctcac
ggatcaaatgaggaagcagttgatgttgaaaaagagattgaaatagcaggggagaagact
gataggccgaaagagctatcagatggatctatgagccatgatgagatacatactgatagg
aaagaaatgctggatgaaaatctggataggcagattggagcggaggtgtcagatgatggg
ttaaaagatcaagctgaaccagacaattggcatctaacttcggagattgggagtgagaga
gaggaaggagagctagcacctgaagttacggaacttgagggtggtaatattattgaaagc
gttgaaataggggaggatcataatgaaccaattgcaacacccgatgcttccccctctaga
gttgatgatgatactctggctgtgacagccatggagatcggcgagattaactctcctgaa
atacaaaatgaagataaaaatgacgaaggtgatatggttgatgaaacttcagaaattcaa
gataagtcaactgattgtaaccaaattgatttggagagtgatcaggctgttgaaactacc
tcagtagctactgagaatactcctagtacacccccggacgtaaatgactctaaacaaggt
agtcctaccgttgctaaaaggtcatctcctgtcagtagtagcacgtctactacaataaat
ttgcaggagcgagccaaggaaagagctatgctgagacaggctggagttgtttcttcattg
gatagacgacctgtgagaacattacgtggtcggggtggtcgaatagagcgtggtggccgt
ggtcaacgatctgggcggggaccacctggtgattcaaatagaagttaa
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integrated database retrieval system