Cucumis sativus (cucumber): 101216544
Help
Entry
101216544 CDS
T02486
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
101216544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csv04121
]
101216544
Ubiquitin system [BR:
csv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
101216544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box
F-box-like
LRR_At1g61320_AtMIF1
LRR_NXF1-5
LRR_8
Motif
Other DBs
NCBI-GeneID:
101216544
NCBI-ProteinID:
NP_001267546
UniProt:
M1GCN5
LinkDB
All DBs
Position
7:18183602..18188194
Genome browser
AA seq
584 aa
AA seq
DB search
MLRMASTFPEDVLEHVFSFIQCHQDRNSISMVCKSWYEIERWCRKRVFVGNCYAVSPQIV
IRRFPDVRSVELKGKPHFADFSLVPDGWGGYVYPWILAMASAYPLLEEIRLKRMVVTDES
LELISKSFKNFKVLVLMTCEGFSTDGLAAIAANCRHLKVLDLRESDVEDLNGHWLSHFPD
TYTSLVSLNIACLVSEVSVSALERLVDRCPNLRTLRLNRPVPLDRHANLLRRAPQLVEFG
AGCYTADLRSEVFSSLTGAFTSCTELKSLSGFWDVVPAYLPSVYPTCSQLTSLNLSYATI
QCDDLTKLVSQCHNLQKLWVLDFIEDSGLEAVAVTCKDLRELRVFPSEPYGLEPNVSLTE
QGLVSVSEGCPKLQSVLYFCRQMTNAALVTIARNRPNMTRFRLCILEPWTPDYVTGQALD
VGFGAIVEYCKDLQRFSLSGLLTDRCFEYIGTYGKKLEMLSVAFAGESDLGLHHVLSGCD
SLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFGACKLLAQKFPQLNVEVIDER
DPPNTRPESCPVERLYIYRSVAGRRLDMPGFVWTMDGDAPLRLT
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaatggcgagtacgtttccagaggatgtgttggagcatgtgttttcttttata
cagtgtcatcaagacaggaactccatttctatggtctgtaagtcttggtatgagattgag
agatggtgtaggaagagggtttttgttgggaactgctatgccgtcagtcctcaaattgtt
atcaggcggtttccggatgtgagatctgtcgagttgaaagggaagccccactttgcggat
tttagtttggtgcctgatggttggggtggctatgtttatccatggatcctcgctatggct
tctgcctatcctttgttggaagagatcaggttgaagagaatggtggttacggatgagagt
ttggagctcatttccaagtcttttaagaattttaaggttcttgtcttgatgacttgtgaa
ggcttcagtactgatgggcttgccgccattgctgctaattgcaggcatttgaaagtattg
gacttgcgagagagtgatgtggaagatctgaatgggcattggctcagccattttcctgat
acatatacgtcattggtatctctcaatattgcttgtttggtctctgaggtgagtgtttct
gcactggagcgtctagtggacaggtgtccaaacttacggacactgcgtctcaatcgtcca
gttccccttgataggcatgccaacctacttcgtcgtgcacctcagctggttgagtttggt
gctggatgctatactgctgatttgagatctgaagttttttcgagcttaactggggcattt
acgagctgcaccgaattgaagagtctgtcaggattttgggatgttgtccctgcatacctt
ccttccgtttatccaacatgctctcagctaacgtccttaaacttaagctatgctacaatt
caatgtgacgatcttacaaagcttgtcagtcaatgtcataatttgcagaagctttgggtg
ctggatttcattgaggattctggccttgaagctgttgcagttacctgcaaagatcttcga
gaattaagagtgtttccatccgaaccatatgggctggaaccaaatgtgtctttgacagaa
cagggccttgtctctgtatctgaaggttgcccaaagctccaatctgttctgtacttttgt
cgtcaaatgacgaatgctgccttagtgaccattgccaggaatcgtccaaacatgaccaga
tttcgtctatgtattctggagccatggactcctgattacgttacgggtcaggcacttgat
gtaggttttggtgccattgttgagtattgcaaagatctccagcgcttttccctttctggc
cttcttacagatagatgtttcgaatatattggaacttatggtaagaagctagagatgtta
tctgtggcatttgcaggcgagagtgatttaggtcttcatcatgtgttgtctggatgtgat
agtcttcgcaagctggagatcagggactgtccttttggtgataaagctcttttagccaat
gctgcaaagctcgagacaatgcgatccctttggatgtcctcttgctcagtgagttttgga
gcatgcaaattgttagctcagaagtttccccaactcaatgtcgaagttatagatgagagg
gatcctccaaataccaggcccgaaagttgtcctgtggagaggctttatatataccgaagt
gtcgctgggcgtcggttagatatgcctggttttgtgtggacaatggatggagatgctcct
ctaaggcttacttga
DBGET
integrated database retrieval system
