Cucumis sativus (cucumber): 101216650
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Entry
101216650 CDS
T02486
Name
(RefSeq) polygalacturonase At1g48100
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv00040
Pentose and glucuronate interconversions
csv01100
Metabolic pathways
Module
csv_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101216650
Enzymes [BR:
csv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
101216650
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
NosD
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
101216650
NCBI-ProteinID:
XP_004141101
UniProt:
A0A0A0LFI8
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Position
3:complement(34558449..34561909)
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AA seq
477 aa
AA seq
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MEMGRKNLKCLTTIAFICVFVCSFSFHCCHARKTVDYRHWQVHRHHQGSGRSLRLTGSGH
VGSEGVVGTSLASKGRATNGGSGNFNVLDFGAKGDGETDDTKAFQSAWESACNVEGSVVE
VPSGSEFLVGPISFSGPNCQPNIMFQLDGKIIAPTSPSAWGSGMLQWIEFTKLKGITVKG
TGTIDGQGSVWWNDSPTDNPTDKNLDKESSGGELPSTKPTALRFYGSDEVTVSGITIQNS
QKAHLKFDSCTAVQVSSLTISSPGDSPNTDGIHLQNSQNVIISNSNIACGDDCISIQTGS
SGVYIHNVNCGPGHGISIGGLGRDDTKACVSNVTVRDVKLQNTMNGVRIKTWQGGSGLVQ
GILFSNIQVTDVQTPIMIDQYYCDGGRCHNGSSAVAISGVNYVNIRGTYTSTPVHFACSD
SLPCTGVTLDTIQLEGSSGSNEPFCWKAYGELKTSTVPPVDCLQSGNPFKAQAHDSC
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggagatgggtaggaagaatttgaaatgtcttacaactattgctttcatttgtgttttt
gtttgctcttttagttttcactgttgccatgctagaaaaactgtagactaccgccactgg
caagttcatcgtcatcatcaaggtagcggccgctctttgaggttgacaggcagtggccat
gttggaagtgagggtgttgtaggaacgtcactagcaagtaaaggtagagctactaatggt
ggttcaggaaattttaatgtgttggactttggagctaaaggtgatggagagacagatgac
actaaggcatttcagtcagcttgggagtcggcttgcaatgtagagggatcagttgtggag
gttccctcaggttccgagttcctcgttggcccgatttcgttctcgggtccaaattgtcaa
ccaaacattatgtttcagttggatggaaagatcattgctcctacaagccctagtgcttgg
ggttcaggaatgttacaatggattgaattcactaaacttaaaggaattacagtcaaaggt
acagggacaattgatggacaaggctcggtttggtggaatgactcaccgacagacaatccc
actgataaaaatttggacaaggaaagcagtggtggagaacttccaagcaccaaaccaact
gcacttaggttctatgggagtgatgaagtaacagtctctggaataacaatccaaaacagc
caaaaagctcacctgaaatttgatagttgcacagcagttcaagtctcttcattaacaata
tcatcaccaggtgacagcccaaacacagatggaattcacttgcagaattctcagaatgtg
atcatttcaaacagcaatatagcttgtggagatgattgtatatccatacaaactggaagc
tcaggtgtatacatacacaatgtcaactgtggaccaggccatggaattagcataggagga
ctaggacgtgatgacacaaaagcatgtgtatccaatgtcacagtccgtgatgttaaactg
cagaatacaatgaatggggtcagaataaaaacatggcaggggggttcaggcttagtacaa
ggaatactattttcaaacattcaagttacagacgttcaaactccaataatgatagaccaa
tactactgtgatgggggtagatgccataatggatcttctgcagtagcaatttcaggagta
aactatgtaaacatcagaggaacatacacttcaacgccggtccattttgcctgcagtgac
agtcttccatgcacaggtgtgacattagacaccattcagcttgaggggagcagtggctcg
aacgaaccattctgttggaaggcatatggtgaactgaaaacctccaccgtccctcccgtc
gactgcttgcaatctggaaatccatttaaagctcaagctcatgattcttgctaa
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