Cucumis sativus (cucumber): 101216792
Help
Entry
101216792 CDS
T02486
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101216792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101216792
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101216792
Spliceosome [BR:
csv03041
]
Complex C
Other components
Step II factors
101216792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND3
AAA_30
ABC_tran
AAA_16
TsaE
Sigma54_activ_2
PhoH
GIPC1_GH2
T2SSE
Motif
Other DBs
NCBI-GeneID:
101216792
NCBI-ProteinID:
XP_004139208
UniProt:
A0A0A0LG89
LinkDB
All DBs
Position
2:2421002..2425951
Genome browser
AA seq
1218 aa
AA seq
DB search
MAASMANGDDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEMGRSCESVDEFDTKL
KENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKGKFRALAIGDDRERAKE
LEKEIELEAHQKHGNRDVEDDRYRDRAGDRGRGRDRDRDRGRDRHRDRDVDRDRDRYRDR
DWDRDKDRDRRRDRYDRDERHGGRDRDDDGGDDDHRRSGRQRDRNRRNGYEENESHRGDV
EDGNGNWRGDRNGRHQPVNHEPELYTVYKGRVSRVMDTGCFVQLNDFRGKEGLVHVSQIA
TRRITNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHSGKDLLPLKKKDADDGPRMNP
SDTKDDGPVVRTGLSGIKIVEDDVTVPSRRPLKRMSSPERWEAKQLIASGVLSVSEYPSY
DDEGDGLLYQEEGAEEELEIELNEDEPAFLQGQSRYSIDMSPVKIFKNPEGSLSRAAALQ
SALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWK
KDAYGKDISFGQKSKLSIQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQVTQ
YLAEAGYTTSGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKY
MTDGMLLREILIDDNLSQYSVIMLDEAHERTIFTDVLFGLLKQLVKRRPDLRLIVTSATL
DAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGDVLLFL
TGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFEPAPPGKRKVVVATN
IAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCY
RLYTESAYRNEMSPTTIPEIQRINLGHTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQ
LYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYR
PREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRK
QLLSIMDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSA
LFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEP
LYDRYHEPNSWRLSKRRA
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttccatggctaacggcgacgatggattgaagaagctcgagtacttatctctc
gtctccaaggtatgttctgaactcgaaactcatttagggttcggagataaagttcttgcg
gagttcattaccgagatgggccggagctgtgagtcggtggatgagttcgataccaaattg
aaagagaatggcgccgagatgcctgattactttgttcgctcgcttttgaggattattcac
ctcattcttcctccgcagaagggtgacagtgagaaggagttgaagaaggagaaggaatca
gatgggaagggaaagtttcgggccctggcaattggggatgatagggagagggctaaggag
cttgaaaaggaaattgagttggaggctcaccagaagcatgggaacagagacgtagaagat
gatcgatatagggacagggcaggggacagaggaagaggaagagacagagacagagacaga
ggtagggatagacacagggatagagatgtagacagagacagagataggtaccgggatcgg
gattgggatcgagataaggatagagatagacgcagagatagatatgatagggatgagaga
catggtggtagggatcgtgatgatgatggcggcgatgatgatcatcgtagaagtggaagg
caaagggatcggaataggagaaatgggtacgaagaaaatgagagtcacagaggggatgta
gaagatggtaatggaaattggagaggtgatagaaatgggagacaccaacctgtcaatcac
gaacctgaactatacacggtctacaagggtagagtttccagagtgatggacacgggttgc
tttgtccaactgaatgatttcagaggcaaggagggtctggttcatgtttctcagattgct
accagaagaattaccaatgccaaggatgttgtaaagcgggatcaagaggtctatgtcaag
gtcatttcagtttcagggcaaaagttgagcctttctatgcgggatgtggatcagcattct
ggtaaggatttgcttccgttaaagaaaaaagatgcggatgatggtcctagaatgaatcct
tcagacacgaaggatgatggtccagtggttaggactggcctttctggaattaagattgtg
gaagatgatgttactgtcccttcacgtaggcctctgaagagaatgagttcaccggagaga
tgggaagctaaacaactgattgcttctggggttttaagtgtaagtgaatatccttcttat
gatgatgagggagatgggctattatatcaagaagagggtgctgaagaagagcttgagatt
gagttgaatgaagatgagcctgcatttctgcaaggtcagagcagatactcaattgacatg
tcgcctgtgaaaatattcaaaaatccagaaggatctctgagtcgggcagctgcacttcaa
tctgcactcattaaggagcgtagagaagttcgtgagcaacagcaacggaccatgcttgat
tcgattccaaaggatcttaatcgaccttgggaagaccccatgccagagactggtgagagg
catcttgcacaagagcttaggggtgttggcttgtcagcctatgacatgcctgaatggaag
aaggatgcctatggaaaggatattagttttgggcagaagtcgaagctctctatccaagaa
caaaggcagagcttacccatttacaagttgaagaaagaacttgttcaggccgtccatgat
aatcaggtacttgttgtcattggtgagactggttcaggtaagacaacccaggtaactcaa
tatcttgctgaagctggatacacaacctccggtaaaattgggtgtactcaaccacgtagg
gtggctgcgatgtctgttgcaaagagggttgctgaagagtttggatgccgtttaggagag
gaagttggatatgcaattcgttttgaggattgtactggacctgatactgtgatcaagtat
atgaccgatggtatgcttcttagggagattttgattgatgacaacttgtctcagtactcg
gtaattatgcttgatgaagcgcacgagagaacaatcttcactgatgttctttttgggttg
ctaaagcaacttgtgaaaaggagacctgaccttcgactgattgtcacatctgcaacttta
gatgccgaaaaattttcaggatatttctttaattgtaatatttttacaattcctgggaga
actttccctgtggagattctctataccaagcagcccgaaactgattatctggatgctgct
ttaatcactgtcttgcagatccacttgacagagcctgaaggtgacgttcttcttttcttg
actggtcaggaggagattgattttgcatgtcagtccctatacgagagaatgaaaggactc
ggtaaaaatgttcctgagttaattattctacctgtctatagtgcattgcccagtgaaatg
cagtccagaatttttgaacctgcccctcctggtaagaggaaagttgtagtggcaactaac
attgctgaggcttcactgacaatagatggaatcttttatgttattgatcctgggtttgct
aaacagaatgtatataacccaaagcaaggacttgattctcttgttattacaccaatctca
caagcatctgccaaacaacgggcggggcgtgctggccgaacaggacctggaaaatgttat
cgcctctatactgagagtgcttatcgtaatgagatgtctcctacaacgataccagaaatt
cagagaattaatcttggtcatactactcttactatgaaagcaatggggataaatgatctt
ctgtcatttgattttatggatccaccttcaccccaagctctaatttcagcaatggagcaa
ctttacagtctaggagcacttgatgaagaaggactgctgactaagttgggtagaaaaatg
gctgaatttcctttagatccacctttgtcaaagatgctgctagctagtgtggatcttgga
tgcagtgatgagattttgaccataattgctatgattcagactggaaatatcttttacagg
ccaagggaaaaacaagcccaggctgatcagaaaagggcaaagtttttccagcccgaggga
gatcatctgactttgcttgcagtttatgaggcttggaaagccaaaaacttttctggcccc
tggtgctttgagaactttgttcagtctcgatccttgaggagagcacaggatgtgaggaaa
caacttctttcaatcatggacaagtacaaattggatgtggtgagcgctggcaagaacttc
acacagataaggaaggcaatcacagcagggttctttttccatgcagccagaaaggatcct
caagagggttatcggacgctagtcgagaaccaaccggtatatatccatccgagcagtgca
ttattccaaagacaacccgactgggtcatataccacgagctggtcatgacaacaaaagaa
tacatgcgtgaagtaacagtcatagatcccaaatggcttgttgaattagctccaagattc
ttcaaagtttcagaccctacaaagatgagtaagcgaaagcgacaagagcggattgaacca
ctctatgacagatatcacgaaccaaactcttggcgtttgagtaagagacgagcttaa
DBGET
integrated database retrieval system
