Cucumis sativus (cucumber): 101216970
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Entry
101216970 CDS
T02486
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101216970
03015 mRNA surveillance pathway
101216970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101216970
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101216970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
101216970
NCBI-ProteinID:
XP_031740559
LinkDB
All DBs
Position
4:22448044..22454356
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AA seq
419 aa
AA seq
DB search
MAKPSRGRRSPPSGSASSSRSRSFSGSDSRSSSRSRSRSASVSRSRSRSRSISSSSSLSR
SGSSRSRSPPPQRKSPTETARRSRPSPPPAKRSSPPPRKPSPVRESLVLHIDALSRNVHE
GHLREIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRSDAEKAQVYMDGAQIDGNVIRA
RFTLPQRQKMPTPPRTVATVPKRDGPKPENVGPDAEKDDMKRQREPSPRRKPPSPRRRSP
VARRGGSPRRQPDSPRRRPDSPPRRRIESPFRRDSPPPRRRPASPMRGGRSPSPLARRHR
SPPRPSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPVVRRRSRSPIRRPARSRSRS
FSPRRGRPGAAGRRGRSSSYSASPSPRKVPRRVSRSPRRPLRGRSSSRSSSSSSPPRKP
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagcagaggccgtcgctcgccgccgtcgggctcagcttcctcctcacgt
tcccgctcattctccggctctgattcccgttccagttcccgttcgcgctccaggtctgca
tctgtgtcccgctcacgctctcgttccaggtccatttcttcgtcttcgtctctctctcgc
agcggtagttctcggagcagaagcccccctcctcagagaaagagtccgactgaaacagct
cggaggtctcgtccttcacctcctccagctaaacgaagttctccgccacccaggaaacca
tctcctgtacgcgaatcacttgttcttcacattgacgcactgagtaggaatgtccatgag
ggtcatttaagagaaattttcagtaattttggtgaagtcgtcaatgtcgagctggcaatg
gatcgcacagtaaaccttcctaaaggatatggatatgttgaatttaaaacgagatctgac
gctgaaaaagcccaagtgtacatggatggtgcccaaattgatgggaatgttatacgagca
agatttacactgcctcaaagacaaaagatgccaacacctccaaggactgtagcaactgtt
ccaaagagagatggtcctaagcctgaaaatgttggtcctgatgctgagaaggatgacatg
aaaagacagagagaaccttctcctcgtcgaaaacctccttcacctagaaggcgctctcct
gttgctcgacgaggtgggtctcctagaagacaacctgattctccacgtcgtcgtccggac
tctcctccacgccgccgcatagaatctccttttcgtcgcgattctcctcctcctagaagg
aggcctgcatcacccatgaggggtggccgttccccatcgcctttggcaagacgacataga
tctcctccaaggccctccccaagaagaattcgtggaagtcctgttcgaagacgttcacca
ccacctcctaggcgccgcacaccacctcgacgtgctcgtagtcctccaagaaggtctcca
gtagttcgtagaagaagtcgttcgcctattagaagaccagctcgatcacgctcccgatcg
ttttcaccacggagaggtcggccaggcgctgccggtaggcgtgggagatcatcatcctac
tctgcatcacctagtccacgcaaggtccccaggagggtatctcgcagtccaagaaggcct
ttgagaggaagaagcagcagcaggagcagtagcagtagttcgccacctcgtaagccataa
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