KEGG   Cucumis sativus (cucumber): 101217287
Entry
101217287         CDS       T02486                                 
Name
(RefSeq) histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03082  ATP-dependent chromatin remodeling
csv03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    101217287
   03083 Polycomb repressive complex
    101217287
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csv03036]
    101217287
Enzymes [BR:csv01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     101217287
Chromosome and associated proteins [BR:csv03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     101217287
   HDAC complexes
    Sin3A-HDAC complex
     101217287
    BRAF-HDAC complex
     101217287
    REST complex
     101217287
    SHIP complex
     101217287
    MiDAC complex
     101217287
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     101217287
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    101217287
  Chromatin remodeling factors
   NuRD complex
    101217287
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 101217287
NCBI-ProteinID: XP_004144561
UniProt: A0A0A0K115
LinkDB
Position
7:1802668..1807936
AA seq 465 aa
MDTGGNSLPSGADGVKRKVSYFYDPEIGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VFKPTLAKDKDLCRFHADDYVSFLRNITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHNQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGI
DDESYHSLFKPIMGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGMDVDNKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRKILEDIRVNLLGYLSKLQHAPSVQFQERPPDTEFQEADEDDDNGDERWDEDSAMDI
DCDRKQLPSRVKAESYDTEIKMEDVAETKGFERPATGTVLDMFDY
NT seq 1398 nt   +upstreamnt  +downstreamnt
atggacactggaggcaattctcttccttctggggctgatggggtgaagagaaaagtgtcg
tatttctatgaccctgagattggcaattactattacggtcagggtcatccaatgaagcca
caccgtattaggatgacccatgctcttcttgctcactatggattgcttcagcatatgcag
gtctttaaacccacccttgccaaggacaaggatctttgtcgtttccatgctgatgactac
gtttcattcttgagaaatattacgcctgagactcagcaggatcagctaaggcagctcaag
cgttttaatgttggtgaagattgtcctgtgtttgatggtctttactctttctgccaaaca
tatgccggtggctcagttggtggcgctgtcaaattaaaccacaaccagtgtgacattgct
gttaattgggctggtggcctacaccatgctaagaagtgcgaggcttctggattttgctat
gtcaatgatattgtcttggctattttagagcttcttaaacagcatgagcgtgttttgtat
gttgatattgatatccatcatggagatggtgtagaagaggctttttataccactgacagg
gtcatgacagtttcgttccacaaatttggtgattattttcctggtactggggatattcgt
gatatcggctatggcaaagggaagtattattccctcaatgttcctttggatgatggaatt
gatgatgaaagttatcattctctatttaaacctataatggggaaggttatggaaatcttt
aagcccggtgctgtagttcttcaatgtggtgctgactctttgtctggggataggttggga
tgtttcaatctttcaatcaaaggtcatgctgaatgtgttaaatatatgagatcattcaat
gttccccttttactgcttggtggcggaggctatactattcgaaatgtcgctcgatgctgg
tgctacgagacgggagtagctcttggaatggacgtcgacaacaaaatgccacagcatgag
tactatgagtattttggacctgattatactctacacgttgcacctagtaatatggaaaac
aaaaattcccgcaaaatattggaagacataagagtaaatcttcttggttatctctcaaag
cttcaacatgcccccagtgttcaatttcaagaaaggcctcctgatactgaattccaagag
gcggacgaggatgatgataatggagacgagagatgggatgaagattctgccatggacatc
gattgtgacagaaagcaattgccgagccgggtgaaagcagaaagttatgacactgaaatt
aaaatggaagatgttgctgagaccaaaggtttcgaaagaccagcaactggaacggttctt
gatatgttcgattattga

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