Cucumis sativus (cucumber): 101217346
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Entry
101217346 CDS
T02486
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
csv03015
mRNA surveillance pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101217346
09122 Translation
03013 Nucleocytoplasmic transport
101217346
03015 mRNA surveillance pathway
101217346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101217346
03041 Spliceosome [BR:
csv03041
]
101217346
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101217346
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101217346
Spliceosome [BR:
csv03041
]
Complex C
Other components
EJC/TREX
101217346
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101217346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
101217346
NCBI-ProteinID:
XP_004138728
UniProt:
A0A0A0LSH7
LinkDB
All DBs
Position
2:complement(21146955..21152369)
Genome browser
AA seq
427 aa
AA seq
DB search
MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
SRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgaatatgaggaagagctcctcgactacgaggaagaagaa
gagaaggcccccgattccgttggagctaaagtcaacggtgaagctggaaagaagggttat
gtcggaattcatagttcgggattcagagacttcctattgaagccagagcttctccgtgct
attgtagactctggatttgagcatccatctgaagtacaacatgaatgtattccccaagct
atcctcggcatggatgttatttgtcaagctaaatctggtatgggtaaaactgctgttttt
gttctgtcaacactgcagcagattgaccctgtggctggtcaagtatctgctctagttctg
tgccatactagggagcttgcataccagatctgtcatgagttcgaaaggttcagcacttat
cttccggatctgaaggttgctgtcttctatggtggagtgaatattaaaattcacaaagat
cttctgaaaaatgaatgtcctcatattgttgttggaacacccggaaggatattggcactg
tcaagagataaagacctatccctgaagaatgtccgacattttatcttggatgagtgtgac
aagatgcttgagtcacttgatatgcggagggatgtacaggagatcttcaagatgactcct
cacgacaaacaagttatgatgttttctgcaacacttagcaaagaaatccgcccagtttgc
aagaagtttatgcaagatccaatggaaatatatgtagatgatgaggcaaagctgacattg
catggtcttgtccagcactacatcaaattgagcgagatggagaaaaataggaagttgaac
gaccttcttgatgcattggacttcaatcaagttgttatttttgtcaaaagtgttaatagg
gcagcggagctagataagttgttggtggagtgtaactttccctctatatgcatccactct
ggcatgtcgcaggaagagaggttgactcgatacaaaggttttaaggaaggacataagcgg
attcttgtggctacagatttggttggtcgaggaattgacattgaacgtgtaaacattgtg
atcaattatgacatgccagattctgctgatacatatctgcacagggttggcagagctggt
agatttggcaccaaagggcttgcaattacttttgtatcatctgcagctgattctgatgtt
ctcaataatgttcaagaaaggtttgaagtcgatattaaggagcttccagagcagatcgac
acctccacttacatgccatcataa
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