Cucumis sativus (cucumber): 101217519
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Entry
101217519 CDS
T02486
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101217519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101217519
Spliceosome [BR:
csv03041
]
Complex B
Other components
Prp19-related factors
101217519
Complex C
101217519
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
RRM_occluded
zf-CCCH
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
101217519
NCBI-ProteinID:
XP_011648901
UniProt:
A0A0A0LGN2
LinkDB
All DBs
Position
2:complement(3918022..3922513)
Genome browser
AA seq
517 aa
AA seq
DB search
MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARVS
EQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGR
PQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQLHPPGTHDQPQAMHYFNIPPPPPQ
QERAFYPSMDPQRMGALVSTHDAGMPPNGPTGSTEARPGSDKQHQHQHQQGHQFPYHPMH
PPPPAQYQQQFYPPPPPYGYVQHYPPYPPYHSGMPPPPQSQTQPHPPSGSQQYQQQHSAP
PSSAPLSHGGASSGSAPLGSTPSASAPSSTSAEPASS
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggttgctaagggatctggaagctgatgggtgggagcgctctgattttccc
atcatctgcgagtcttgccttggcgataacccctacgttcgcatgacgaaagctgattat
gataaagaatgcaaaatttgcacacgcccatttacagtgttcaggtggaggcctggacgt
gatgctagatataagaaaacagagatttgtcagacatgtagtaagttaaaaaatgtatgt
caagtttgccttttggatcttgaatatggcttaccagttcaagttcgagacactgcactc
tctatcaactccaatgatgctattcccaagagcgatgtgaatagggaatattttgccgag
gagcatgatcgaaaggcaagagctggtatcgattatgagtcctcatatggaaaggcacga
ccaaacgatactattttgaagcttcaacgaaccacaccatactacaagaggaatcgggca
catgtttgtagtttttatattaggggtgaatgcaccagaggttctgaatgcccttatcga
cacgagatgcctgaaactggagagttgtcccaacaaaatatcaaggatcgttattatggg
gttaacgatccggttgcactgaagcttcttaacaaggctggagagatgccttccctggaa
ccgccagaagatgagagtattagaaccttgtatgtgggcggacttgacgctcgagtcagc
gagcaagatcttcgagataacttttacgctcatggcgaaattgaatctatcagaatggtg
ctacaacgtgcatgcgcttttgtaacctacaccaccagagaaggtgcagaaaaggctgca
gaagagctttctaacaagctcgtaattaggggccttaggttgaaattgatgtggggcaga
cctcaagcaccaaaagccgagatagaaggttctgatgaagcaaaacaagctgccgtggct
cacagtggaatgttgccgcgagcagttatctcacagcagcacaaccaattacaccctccg
ggaacccatgaccaacctcaagctatgcactacttcaatattccacctccaccacctcaa
caggagagagcattctacccatcaatggaccctcagagaatgggagctctggtttcgact
cacgatgcagggatgccccctaatggacctacaggttcaaccgaagctagacccggttct
gacaaacaacaccaacaccaacaccaacagggacatcaatttccctatcacccaatgcac
ccaccaccacctgcacaatatcaacagcaattttatcctccgccgccaccatatggttat
gtacaacattatccaccatatcctccttatcattcaggcatgccaccaccgccgcagtcc
caaacccagccccatcctccttcaggttcccagcaatatcagcagcagcattctgcacca
ccaagctcagcccctctgtcccatggaggagcatcttccggttcagcaccgctgggatca
acaccttcagcgtctgctccatcttcaacgtctgctgaacctgcatcatcgtag
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