Cucumis sativus (cucumber): 101218276
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Entry
101218276 CDS
T02486
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101218276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101218276
03009 Ribosome biogenesis [BR:
csv03009
]
101218276
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101218276
Spliceosome [BR:
csv03041
]
Complex A
U2 snRNP components
U2 related factors
101218276
Complex B
101218276
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
101218276
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
90S particles
Helicases
101218276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
SRP54
nSTAND3
ABC_tran
AAA_30
T2SSE
AAA_7
AAA_33
FtsK_SpoIIIE
Flavi_DEAD
NACHT
Motif
Other DBs
NCBI-GeneID:
101218276
NCBI-ProteinID:
XP_004135980
UniProt:
A0A0A0K843
LinkDB
All DBs
Position
7:19079116..19083776
Genome browser
AA seq
732 aa
AA seq
DB search
MGAERKRKVSLFDVVDETSVSAKLNKVNGGVAPLNNGGGNAGNSLINRWTGRQFSQRYYE
ILEKRKTLPVWHQKEEFFQVLKSSQTLILVGETGSGKTTQIPQFVLEAVDLDSPDKRKKM
MVACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAM
TDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYG
APLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHLCEPPGDILVFLTGEEEIEDACR
KINKEIGNLGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEDGPAGRKIVVSTNIAET
SLTIDGIVYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYT
EKSFQNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL
GALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFKCSNEILSVSAMLSVPNCFVRPREA
QKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFINHRAMKAADNVREQLVR
IMSRFNLKLCSTDFNNREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNC
LDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIASHYYDLENFPQCEAKRVLERLYKK
REKDREESRNRK
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcggagaggaagagaaaggtcagtttatttgatgtggtggatgaaacctcggtc
tccgcgaagttaaacaaagtgaatggtggagtagcgccgttgaacaatggcggtggaaat
gcggggaatagtctcatcaacaggtggactgggaggcagttctcgcagaggtactatgag
attttggagaagaggaagactttgcctgtttggcatcagaaagaggaatttttccaggtt
ttgaagagcagtcagactttgattttggttggtgagactggtagtggtaaaactactcag
attcctcaatttgttttagaagctgttgacctggatagtccagataaacggaagaagatg
atggttgcatgcactcagcctcgcagggtggcagcaatgtcagtttctagacgtgttgct
gaagagatggatgtgactataggagaagaggtgggttacagtatccgttttgaagactgc
agtagtgcccgaaccgttttaaagtatttgacagatggtatgcttttgagagaagcgatg
acagatcctcttttagaaaggtataaagtaattattcttgatgaggctcatgaaagaaca
ttagcaacagatgttctttttgggcttttgaaagaagtattgaaaaataggccagaccta
aagctggtggtcatgagtgctacacttgaggctgaaaagttccagggttatttttatggt
gctccacttatgaaggttcctggtaggcttcatccagtcgaaatattttacacacaggaa
cctgaaagggactatcttgaagctgctatccggacagttgtacagattcatctgtgtgaa
cctccaggtgatatacttgttttcctcactggtgaggaggaaattgaagatgcatgtcgc
aaaataaataaagagattggaaaccttggcgaccaggttgggcctgtgaaagtggtgcct
ttatattcaactcttcctccagcaatgcagcagaagatatttgaacctgctcctcctcca
gtaaaagaggatggacctgctggaaggaagattgtggtctccacaaacattgcagagact
tctttgaccatagatggcattgtttatgttattgaccctggattttcaaaacagaaggtc
tataatcctcgagtacgtgtggaatcattattggtgtctcctatatcgaaggctagtgcg
catcagagatctggtcgtgctggaagaacccagcctggaaaatgttttagactttacaca
gaaaagagtttccaaaatgatttgcaaccacagacatatcctgaaattttaagatcaaac
cttgcaaatactgttcttaccttgaagaagttgggaattgatgaccttgtgcattttgat
tttatggatccacctgctcccgagacattgatgcgagctttagaagttctgaattactta
ggtgcattggatgatgatgggaatctaacgaagcttggggaaataatgagtgaatttcca
ttagatcctcagatgtcaaagatgctcgttgttagtccagaattcaaatgttcaaatgaa
atattatcagtttctgccatgctttcagtacccaattgctttgtccggcctagggaggct
caaaaggctgctgacgaagcaaaagctaggtttggccacattgatggagatcatcttacg
ctcttgaacgtgtaccatgcttacaagcaaaacaatgaggatcagtcatggtgctacgag
aactttatcaatcacagggcaatgaaggctgcagataatgtgagagagcaactagtccgc
atcatgtctaggtttaacctcaaattatgcagcacagatttcaacaaccgtgagtactac
gtaaacataaggaaggccatgctatctgggtatttcatgcaagtagctcatttggaacgg
actggacactacttaacagtgaaggacaaccaggtggtacacttgcatccatcaaattgc
ttggatcataaaccagaatgggttatttacaatgaatacgtcctaacgagtaggaatttc
atccgtacagtgacagatatccggggtgaatggttggtggacatagcatcacactattat
gatctggagaacttccctcaatgtgaggccaagcgtgttctcgaaaggctgtacaagaag
cgggaaaaggatcgtgaagaaagcaggaatagaaaatga
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