Cucumis sativus (cucumber): 101218812
Help
Entry
101218812 CDS
T02486
Name
(RefSeq) pectate lyase isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv00040
Pentose and glucuronate interconversions
csv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101218812
Enzymes [BR:
csv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
101218812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
101218812
NCBI-ProteinID:
XP_004152537
UniProt:
A0A0A0LR32
LinkDB
All DBs
Position
1:complement(5004547..5008819)
Genome browser
AA seq
439 aa
AA seq
DB search
MRETKTTIVGIKLLMIFGFVMIFPTLKANIADFDEVWQKRAIEAQKASFEAYEPHPEEET
NNFNKQVHRSLDGGNNTRRHLRKYTGPCLATNPIDRCWRCDRNWARNRKKLADCALGFGR
RTTGGKDGKIYVVRDSSDNDLVNPKPGTLRHAVIQERPLWIIFAHDMVIRLSEELIVTDD
KTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGMIRDSVSHYGFRTRSDGD
GISMFGASRVWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVILLGASNGYSNDQ
IMQVTLAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAP
PNPNCKEVTKRVYAPESEWRSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTF
VTRLTRFAGPLKCKKNQPC
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagagagacaaaaaccaccattgttgggattaaacttctaatgatatttggttttgta
atgatatttccaacactaaaggctaatattgcagattttgatgaagtttggcagaaaaga
gctatagaagcacaaaaagcttcctttgaggcctacgaaccccatccagaagaagaaact
aataatttcaacaagcaagttcatagatctttagatggtggaaataacacaaggagacat
ttgaggaagtacactggtccatgtttagccacgaatccgattgatcgatgctggagatgc
gatagaaattgggctagaaaccgtaagaaactagctgattgtgcccttggtttcggtcgt
cgaacgaccggaggcaaagatggaaagatttacgtggtccgagattcaagtgataatgac
ttggtgaatcctaaaccaggaaccttgcgccatgctgtgattcaggagagacctctttgg
attatatttgctcatgacatggtgattaggctaagtgaagagcttatagtgactgatgat
aaaacattagatgggcgaggtgccaatgtgcacattgctaatggtggtcaaattactcta
caatttgtgaagaatataatcatccataatcttcacattcatgacatcaaggctggcaat
ggaggcatgataagagattcggtgagccactatggattccgaacacggagtgatggtgat
ggaatctcgatgttcggagcctcgagggtttggatcgatcatgtttcaatgtctaattgt
caagatggactaatagatgcagtcatggcatctactgccattaccatttccaactgccac
ttcacccaccataatgatgtgattttattaggtgcaagtaatggctactcgaatgatcag
ataatgcaggtaactcttgcatttaatcactttggtaaagggttggtgcaaaggatgccg
agatgtcgatggggatttatccatgtagtcaataatgactacactcactggcttatgtac
gccatcggcggcagccacaaccccaccattatcagccaggggaaccgtttcattgctcca
ccaaatccaaattgcaaagaggtgacgaaaagggtgtatgcaccggaaagcgaatggaga
tcttggaactggaggtcagagggagatctgatgatgaatggagctttcttcatccaatct
gggaaccccatcaaaagatactccaagaaagatgttatccattcgaaacccgggaccttc
gtcacaaggcttacacgatttgcaggtcctctgaaatgtaaaaagaatcaaccctgttag
DBGET
integrated database retrieval system
