Cucumis sativus (cucumber): 101219246
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Entry
101219246 CDS
T02486
Name
(RefSeq) protein RST1 isoform X1
KO
K27498
focadhesin
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101219246
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101219246
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
Motif
Other DBs
NCBI-GeneID:
101219246
NCBI-ProteinID:
XP_011652289
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All DBs
Position
3:complement(34666944..34683856)
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AA seq
1860 aa
AA seq
DB search
MDSYAPFLEKLRLPQPSLQRFAVASIFSKLRSAPKHLDSDSASGREAISQCLLHSSPAVV
DQSVRELCRLVKESHIDVSRALIELQAALEGSESRFVDVFVKGLGFLVQFGFRKHNGSWQ
FGSAETHPFVKVLSCRVDVQAQLLHQIPLFMVQNKSLGMEAVCKFLSPFVNYSILKTQFS
DSSSSLFARNLMSSIMSVCCSYPHEAMPILALLIQSLKYVPRRTLEDFWNFIHLVESLVD
ACTVMLRFVVNNGSHLKMEAQQSSIELLDTVLSLYACLDRHVCGCERILELSRYLLSVQK
DLGMQYVPKLSSAFPPLFTILTKSELEHEQLLILKLLVSLLRWKAECEYANRATTRVPSE
ELLFVFPAISLMSSPSKSIKGAATELLSMLEKLLVRLIVTTKDEVEERGFQFPSIRTPGS
IVVQLLEKLWFQGRSSLSSGFFLDFALYGQSNSKDDNDLPRKCWTSKLREYSLWIVERRK
SLLPLTQFEELFVKAYAVAEMSFLVGAITSIMVVHHSLGTDAVELLAAIGTLDPKIGFQL
LLLVLFYCNIFSRKDVQRQDMVLKLLGLLPSLASHSAMVPFIVETISPMLRKDSKPVLYA
TATRLLCQTWEINDRAFGSLQGVLLPKGFSDFNREGEICLSLSASIRDVCRKDADRGVDL
ILSVSACIESPDPINQALGFQGLAHLCEADVIDFYTAWDVIAENPLDYSANPVLANSLCK
LLRWGAIDAEVYPEASKNIIGILLAVGTSTSPSHDLQWSKAKASAFDALAQYEVSLLERN
FQDFKEKSTSVLFTEKNVDVLSAIKDFLVKIIFHEHSNRRRLVKEKRVAGSKIEKLLDVF
PRLVFSSGVRSNVRQLPAAALLCHSFSSRKGNDPTRRTRDEHTSYENAMREIGDSLQLSR
NIAMALLALESWKAFMERWLKSEVLSSDVRDTVVISEKTSKAANEILKRIIHVAEEALPR
CAENMALAIGALCMVLPQAAHAVKSTASKFLLNWLFQHEHELHQWSSAISLGIISRCLHV
TDHKLKFQIVSGLLEVLSVTKSTLVKGACGVGLGYSSHDLFSGVGIVDKSNLGGDKQTTK
IKEVELLGTIVRSLSLMICQLTGSSKDMFEDLFALVPVHSSGISVDSQLLHKNGDPEDDV
WGVAGLVLGLANTIGALYKIGAYDAVLKIKSLISSWFPHGNSVRSGSFDEVSIRVLSVGS
CLALPTMTLFCHRLELVDGDELDHLISAYKEIISDLLPVKRSCTSHQNLLMASCIGAGNL
LAGILNEGVHSIEVARVQDLLELFKRCYSNPYSPLIHFGGMLGVVTAMGVGVGSLFDVHP
TISSVQTEHDLKETSHLLGPLLSSRVCEPLLTSIIQELYLVAQNSDDKKLQQYAAWALSF
LRHNIWSKEFPNLRNLETDVSDSRSSPQNFPTDGVGMRLCNWLMQLNLSETGTATHTETL
VTTLRCLSQAPRLPSLDWGAIIRRCMRYEDQVAELVPPSSALRKGIVREECLKFSLAHAN
QFDQLLIFLDELSDISRFRTLELNLQSCLLTHLAGLMKVFSNARVEKLFNDMKIYMSSFY
SDQLLYNYEKHLLCISCWKGLYQCLDEANLNSLECIAHIEDFMVVLFTMLPTLSSSTNKE
VDEIHSTKEWSEAIRCLSKARQTWLLNFLQISSDDLVPKDQKLFEVLKKMKAKAKLTRNG
SLPMSELGKMKTLMLNLKSQDVWDVLVEVVAALQIAEGNVKRQWVVDVVEISCVSVHPST
AIQFVALLSSSFSKYMPLLTLDPQNVLNNLPVTLNSLLYTSAWSSIAESVASCLFASTER
IYLATQSPNVDGTHGSQPIDESEIDAATSLLDVTHNTCVSLKDFLPFGEQLRLANMNIIT
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggactcgtatgctccatttctagagaaactccggcttcctcaaccgtcccttcaacgt
ttcgccgtcgcttcaatcttctccaagctccgatctgccccgaagcatctcgactccgat
tccgcctcgggaagagaagccatctcccaatgcctcctccactcctctcccgccgtcgtc
gaccaatcagtacgagagctttgccgcttagtcaaggaatctcacatcgacgtctctcgt
gccctcatcgaactccaagccgctctcgaaggatccgaatcgcggttcgttgacgtgttc
gtcaagggactgggtttcctagtccagtttggattccgtaaacacaatgggtcatggcaa
tttggctccgcggaaactcatccgtttgttaaggtgttatcttgtcgagtggatgttcaa
gcccagctcttgcaccaaattccactgtttatggtacaaaacaagtcattgggaatggaa
gctgtctgcaaattcttaagcccatttgtgaactattcaatattaaaaacacagttctca
gactcatcatcttcattatttgcacggaatttgatgtcatcaattatgtccgtttgttgc
tcgtatccgcatgaggcaatgcctatactagctttgttaattcaaagcctcaagtatgtc
ccacgcaggactctagaagatttttggaatttcatacacttggtggaatctttggtggac
gcttgtactgtgatgttaagatttgtagtcaacaatggatcgcatctcaaaatggaggct
caacaaagcagcatagaattgttagatacagttctctccctgtatgcatgccttgacaga
cacgtttgtggctgtgagcgcattcttgaactgtcaagatatttgttgtccgtacaaaag
gaccttgggatgcaatatgtaccaaagctatcttctgccttcccaccattatttacaatc
ctcaccaaatcagagctagaacatgagcaattattgatattgaaacttcttgtatccctc
ctacggtggaaagctgagtgtgaatatgccaacagggcaacaacacgtgttccaagtgaa
gaacttctatttgtctttcctgccatcagtctcatgtcatctccttcaaaatccattaaa
ggggcagcaactgaattgctttcgatgttagaaaagttgttggtgaggctaatagtgaca
acaaaggacgaagttgaggagcgggggttccagtttccatcgattaggacacctgggtct
attgttgttcagcttttggaaaagctatggttccagggccgttcttcactgtccagtgga
ttttttttggattttgctctttatggccagagtaatagcaaagatgataatgatttgccc
agaaagtgttggacatctaaattaagagaatactcattatggattgtcgagagacgaaaa
tcccttttgcccctcactcaatttgaggaattatttgttaaagcctatgctgttgcagaa
atgtccttcctagtaggtgcaatcacttccattatggtggtgcatcattcattgggaact
gatgctgtagagttactagccgcaattggaactttggatccaaaaattggatttcagttg
ctgcttttagttcttttttactgtaatatattttcaagaaaagatgttcaacgccaggat
atggtgcttaaacttttgggattgcttccaagccttgcttcccacagtgcaatggttccg
tttatagttgaaactatttcacctatgcttcgtaaagattcaaaaccagtcttgtatgct
acagcaactcgattgctatgtcaaacctgggaaatcaatgatcgtgcatttgggagtctg
caaggagtcctgcttccaaagggattttctgactttaaccgtgagggagagatttgtctc
agtttatctgcttcaattcgagatgtttgcagaaaagatgcagatagaggagtggatctt
atcttgtctgtttcagcatgcatagaaagccctgatcctatcaatcaagctcttggattt
caaggtcttgcacatctatgtgaagctgatgtcattgatttttacactgcatgggatgtc
attgcggagaatccactggactattctgcaaatccagttcttgcaaatagcctctgtaag
cttctcaggtggggtgcaattgatgctgaggtctatccagaagcttcaaaaaacataata
ggaattcttcttgctgttggcacatcaacttctcctagtcatgatttgcagtggtcgaag
gccaaggcttcggcttttgatgccttagcacaatatgaggtgtcccttcttgagaggaat
tttcaagattttaaagaaaagagcacgtcagttctttttactgagaaaaatgtggacgtc
ctcagtgccataaaagactttctggttaaaattatatttcatgagcacagtaaccgaaga
cgactagtaaaggagaagagagttgctggaagcaagattgagaagctactagatgtcttt
cctcgacttgtcttttcttcaggggtcagaagtaatgtcaggcaactgcctgctgctgca
ctgctttgtcattctttctcttctagaaaagggaatgatcctacaagaagaacacgagat
gaacacaccagttatgagaatgcgatgcgtgaaattggtgattctcttcaactttcaaga
aatattgccatggctctcttagccctagaatcatggaaagcatttatggaacgctggtta
aagtctgaagttttatcatccgatgttagagatactgtcgttatctcagaaaaaacttct
aaagcggctaacgaaattttgaagagaataatacatgttgctgaagaagctttgccaaga
tgtgctgaaaatatggcactagctattggtgcactttgtatggtcttgcctcaggctgcc
catgctgtgaaatctactgcttctaagtttctgttaaattggttgttccagcatgagcat
gagcttcaccaatggtcatctgccatatcccttggaataatctctagatgcctacatgtg
accgaccataaattgaaatttcagattgtctccggacttcttgaggttttaagtgttacc
aagagtactcttgttaaaggagcttgtggagttggcttaggctattctagccatgatctc
ttttctggggttggaattgttgataaatcaaacttgggtggagataagcaaacaaccaag
ataaaggaagtagagttactgggaactatagttagatctttatctttgatgatatgtcag
ctcacgggatcttctaaagatatgtttgaagatctttttgcgttggttccagtacactct
tctggtatcagtgtagattctcagctgttgcataagaatggtgacccagaagacgatgtc
tggggtgttgctggactagtccttggtctggctaataccatcggtgcactgtacaaaatt
ggagcatatgatgctgtcctgaagatcaaaagcttgatttcctcgtggtttcctcatgga
aattctgtacgctctggttcatttgatgaagtttctattagagttctctctgttggatcc
tgtcttgcactaccaaccatgacattgttttgccatagacttgagttggtggatggcgat
gaactggaccatttaataagtgcctataaggagattatttctgacttgttacctgttaaa
agatcttgtacatcccatcagaatttgttgatggcatcatgcataggagcagggaacctc
cttgccggcattctaaatgagggggtgcattctattgaagttgcacgtgtccaagacttg
ctggagttatttaaaagatgttattctaatccttacagtcctttgatccattttggtgga
atgcttggagtagtaactgccatgggagtgggtgttggaagtttgttcgacgtgcatcct
acaatatcatcagttcaaactgaacatgacttaaaggagacttcccatcttctgggccca
cttctttccagtcgcgtttgtgagccactgttgacatcaatcatccaagagctgtatctt
gttgcacagaactctgatgacaagaagctgcagcaatatgctgcatgggcattatcattc
cttagacataatatttggtcaaaggaatttccaaaccttcggaacttagagacagatgta
tctgattcaagatcttcacctcaaaatttccctacggatggtgtaggaatgcggctatgc
aattggctaatgcagctgaatctttcagagacagggacagctacacatactgagactcta
gtaaccacactacggtgtctttctcaagctcccagattgccgtccttagactggggagca
ataattaggcgctgcatgaggtatgaagaccaagttgctgaattggtgccaccaagttct
gctcttagaaagggcatagtaagggaagaatgcttgaagttctcattggcccacgcaaac
caatttgaccaattgcttatttttctcgatgagctctccgacatctccaggtttaggaca
cttgagctgaatctgcagtcatgcctgcttactcatctcgcaggtctcatgaaagtgttc
tctaatgcaagagttgaaaaacttttcaatgacatgaaaatttacatgtcttctttttac
tcggaccaactcctgtataattatgagaagcatttactatgcatctcgtgctggaagggg
ctctaccaatgtcttgacgaagctaatcttaattcattggagtgcatagctcatattgaa
gacttcatggtggttctttttaccatgttacctacattgtcctctagtaccaacaaagaa
gtagatgaaatacactccacaaaagagtggtccgaggcaatcagatgccttagcaaggca
aggcagacctggttgctgaacttccttcagatttcatccgatgatctagtaccaaaagat
cagaagttatttgaagttctaaaaaagatgaaagccaaagccaagctaacaaggaatggt
tctctcccaatgagcgaactaggaaaaatgaaaaccctgatgctgaacttgaaatcacaa
gacgtgtgggacgtactagttgaggttgttgcagctcttcaaattgcagagggtaatgtc
aagagacaatgggtagtcgatgtagtggaaattagctgtgtatcggtgcatccttccacg
gcaatccaatttgttgctttactatcaagtagctttagcaaatatatgcctctactcact
ctggaccctcaaaatgtgttgaacaatctgccagtcacccttaattctcttctgtacaca
tctgcctggagttccattgcggagtccgttgcttcatgtctatttgcctcgaccgaacgc
atctatctggccacccagtctccgaatgtggatggcacacatggctcccaacctattgat
gaaagtgaaattgatgcagctacttcactattagatgtgacgcataatacatgcgtttct
ttgaaggacttcttgccatttggggagcagcttagacttgcaaacatgaacatcatcact
tag
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