KEGG   Cucumis sativus (cucumber): 101219355
Entry
101219355         CDS       T02486                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03013  Nucleocytoplasmic transport
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101219355
  09122 Translation
   03013 Nucleocytoplasmic transport
    101219355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101219355
   03041 Spliceosome [BR:csv03041]
    101219355
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     101219355
Spliceosome [BR:csv03041]
 Complex C
  Other components
   EJC/TREX
    101219355
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101219355
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_Vps41 DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 eIF2A WD40_RFWD3 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_HPS5 Tricorn_2nd Beta-prop_DCAF12 WD40_MABP1-WDR62_1st TRM82_WD WDR90_beta-prop_4th B-prop_COPA_B_2nd Beta-prop_IFT80_2nd PAC11 Beta-prop_WDR41 DUF7099 Beta-prop_ACSF4 Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_VPS8 Beta-prop_WDR11_1st CNH
Other DBs
NCBI-GeneID: 101219355
NCBI-ProteinID: XP_004149572
UniProt: A0A0A0L651
LinkDB
Position
3
AA seq 314 aa
MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV
ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG
THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS
LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS
FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
ADEGIFRIFGFESP
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaggaatcagcccaagctttcaagaatcttcacagcagagagtatcaaggtcacaag
aagaaggtacattctgtggcatggaattgcacgggcatgaagcttgcttccggttctgtt
gatcaaactgctcgagtttggcatattgagcctcacggacatggtaaggttaaggatgtt
gagttgaaagggcacactgatagtgtagatcagctttgctgggaccctaaacattctgat
cttatagcaactgcatctggagacaagactgttcgactatgggatgctcgcaatgggaaa
tgctcacagcaagctgagctcagtggggaaaatatcaacatcacctacaaacctgatggg
acacacatcgctgttggaaatagggatgatgaacttacaattctggatgttaggaagttt
aaaccagttcacaagcgcaagttcaactatgaggtgaatgaaattgcatggaacatgact
ggggagatgtttttcctgacaactggaaatggtactgttgaagtactagcatacccatcg
cttcgaccaatcgaaactcttatggctcatacagcgggttgttactgcattgcgattgac
cctgttggagggtattttgcagttggaagtgctgattcattagttagcttatgggatata
tcgcagatgctttgtgtgcgaacatttacaaaacttgaatggcctgttagaacaataagt
ttcaaccacacaggagaatacattgcttctgccagtgaggatttgttcattgatatatca
aatgttcaaacgggacgaacggttcatcagattccttgtcgggctgcaatgaacagtgtg
gagtggaatcctaaacataacttacttgcatatgctggggatgacaagaacaagtatcag
gctgatgaaggtatttttaggatctttgggtttgaaagtccatga

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