Entry |
|
Name |
(RefSeq) protein RDM16 isoform X1
|
KO |
K12843 | U4/U6 small nuclear ribonucleoprotein PRP3 |
|
Organism |
csv Cucumis sativus (cucumber)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:csv00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101219411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:csv03041]
101219411
Spliceosome [BR:csv03041]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101219411
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
5:complement(4350996..4356777)
|
AA seq |
923 aa
MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR
ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL
REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS
EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG
KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS
SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL
KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA
NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK
PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN
PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK
AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK
ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK
PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL
FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK
RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR
KIFADAGVGHYWDFAINFSDDQL |
NT seq |
2772 nt +upstreamnt +downstreamnt
atggatagggtttccgagaaggagaaatcaagcaagcgttctagagaagaacgcgatcga
gaccacaagcatcgaagtcgggataccgaggataagcatttatccaaggatgaaaagcat
cgtgaatccgatcgccaccatcgccggcgacaccatcgatcggaccgtgattcgaagcgt
gagcgttcgcatgagcctcgtgaacacaaacatcggcgtgatatgtctcctgatgagcgt
gaaagctcccaagaccgcgattttaagcgggaaaggtcttatgaacttagggaggagaga
gaaagaagtagggatagggattcgtctaagcgagagaagtcgaatgaaccgagaggattg
agagaaggcagcgaagagcgtggcaagctgcgtgaggtgaggcgcgaggaatcagacaat
gagcatgaacgggaagggtcgttcgagcctattcaaaattccgtacgtccaaacaagagg
aaggagaggggaggaagtgaggatagatttgatggtggggagaagagggccagggcttcg
gaagttgggaatgaagtgaatggagctgagatggatgagaaaaaggagcggaggagattt
gctgacggtgagaaagacgaaggagcaaacttgagtggtcggggaaggagggacaggaag
cggtttgaggatcgagggaaggaagaagataatggtggaaatgttgatgagaagcatggg
aaagtgaatgaatacaagtccaaaggagacgttggggatgggaaagttcagtttggaggc
accaccgatgaaaaaaggtcactggggaatggatctatggtggaacctaccgatatgcca
tcagcaagtgtgccccagaatttgttacatcctagtcattcccttcctatcaaggtatct
tcaatttctaccacaaatgaaaataggggagttagtattaccagatctcatgaggttcat
ggaaaatctagtacagatgggacatcctcaactgctgggaaaagtggaaatctctctctt
gatgctttagcaaaagctaagaaagctttacagatgcagaaagaattggcggagaagttg
aagagaattcccctgatgaagaaggttgggggttcaagttctgctaatagctcagttgtg
aaattggaggagaaagctaaacctcccagtggtatattgggtccactgtcaactaccaat
gatgctacaactctttcaactggggtagtgtctagttcgtcgacattaccttctgctgcc
aatgctcttgatggtggtattaatgttccggctggccttacctctataccccatattgaa
gctgttaagcgtgctcaggagctcgctgccaggatgggatttcgccaggatccagagttt
gctcctcttataaatttgtttccagggaatgtagcaactgacgttgctgttccacagaaa
ccaaccaaggcccctgttcttcgtcttgatgcacttggtagggaaattgacgaacaagga
aatgtagtcaatataaccaaacccagcaaccttagcactcttaaggttaacatcaacaaa
caaaaaaaggatgcatttcagattcttaaacctgaacttgatgtggatccagattcaaac
cctcattttgatgagagaatgggtataaataaaactaaactgctgaggccaaagagaatg
agtttccagttcgttgaggaagggaaatggtcgaaggaggctgaaaccttaaaattgagg
agtaaatttggagaggcacaagcgaaagaacgaagagaaaagcaggcacagttggccaag
gcaaaggctgcacctgatataaatccaaatttgatcgaggtttcagagagagtggtgaag
gaaaaaacaaaagacccaattcctgaaattgagtggtgggatgtcccgcttttgcaatcc
ggtgcgtacaaggatttgggagatggttttgtggccgatgacaaattgagaaaggacaag
attaccatatacgtggagcatcctcgtcctattgaacctcctgccgagccagctctcccc
cctcctcaacccctaaagctaacaaagaaggagcagaagaaactccgtacacagcgtcgt
ctagcaaaggagaaagatagacaggaaatgattagacaaggcctgatagaaccacctaaa
ccgaaagttaaaatgagcaatttaatgaaagttcttggctcagaagcaacccaagatcct
actaaacttgagaaagagattcgtgctgcagctgctgagagggagcaagctcacatagat
cgaaatattgcacgaaaactcacccctgcagagcgccgtgagaagaaagaacgtaaacta
tttgacgattcaaattcactcgagacatttgtgtctgtttacaagatcaacgatctatca
cacccccaggcccggtttaaagttgacgttaatgctagagagaaccgattgacagggtgt
gctgtgatatgcgatggcatcagtgttctggtcgttgaagggggtagcaagtccatcaag
aggtacgcaaaacttatgctcaggcgtataaattgggctgcttctgtgaaagaggaggaa
gaggaggaaaatgacgataaaccccttaacaaatgttccttggtatggcaaggaagtgtt
gccaaatctagcttcaatagattttccatccaggagtgcatgactgaggcagctgctagg
aagattttcgctgatgccggtgtcggtcattactgggattttgctattaacttctccgac
gatcaattataa |