Cucumis sativus (cucumber): 101219411
Help
Entry
101219411 CDS
T02486
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101219411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101219411
Spliceosome [BR:
csv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101219411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
101219411
NCBI-ProteinID:
XP_004143591
UniProt:
A0A0A0KLQ4
LinkDB
All DBs
Position
5:complement(4350996..4356777)
Genome browser
AA seq
923 aa
AA seq
DB search
MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR
ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL
REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS
EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG
KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS
SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL
KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA
NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK
PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN
PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK
AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK
ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK
PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL
FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK
RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR
KIFADAGVGHYWDFAINFSDDQL
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggatagggtttccgagaaggagaaatcaagcaagcgttctagagaagaacgcgatcga
gaccacaagcatcgaagtcgggataccgaggataagcatttatccaaggatgaaaagcat
cgtgaatccgatcgccaccatcgccggcgacaccatcgatcggaccgtgattcgaagcgt
gagcgttcgcatgagcctcgtgaacacaaacatcggcgtgatatgtctcctgatgagcgt
gaaagctcccaagaccgcgattttaagcgggaaaggtcttatgaacttagggaggagaga
gaaagaagtagggatagggattcgtctaagcgagagaagtcgaatgaaccgagaggattg
agagaaggcagcgaagagcgtggcaagctgcgtgaggtgaggcgcgaggaatcagacaat
gagcatgaacgggaagggtcgttcgagcctattcaaaattccgtacgtccaaacaagagg
aaggagaggggaggaagtgaggatagatttgatggtggggagaagagggccagggcttcg
gaagttgggaatgaagtgaatggagctgagatggatgagaaaaaggagcggaggagattt
gctgacggtgagaaagacgaaggagcaaacttgagtggtcggggaaggagggacaggaag
cggtttgaggatcgagggaaggaagaagataatggtggaaatgttgatgagaagcatggg
aaagtgaatgaatacaagtccaaaggagacgttggggatgggaaagttcagtttggaggc
accaccgatgaaaaaaggtcactggggaatggatctatggtggaacctaccgatatgcca
tcagcaagtgtgccccagaatttgttacatcctagtcattcccttcctatcaaggtatct
tcaatttctaccacaaatgaaaataggggagttagtattaccagatctcatgaggttcat
ggaaaatctagtacagatgggacatcctcaactgctgggaaaagtggaaatctctctctt
gatgctttagcaaaagctaagaaagctttacagatgcagaaagaattggcggagaagttg
aagagaattcccctgatgaagaaggttgggggttcaagttctgctaatagctcagttgtg
aaattggaggagaaagctaaacctcccagtggtatattgggtccactgtcaactaccaat
gatgctacaactctttcaactggggtagtgtctagttcgtcgacattaccttctgctgcc
aatgctcttgatggtggtattaatgttccggctggccttacctctataccccatattgaa
gctgttaagcgtgctcaggagctcgctgccaggatgggatttcgccaggatccagagttt
gctcctcttataaatttgtttccagggaatgtagcaactgacgttgctgttccacagaaa
ccaaccaaggcccctgttcttcgtcttgatgcacttggtagggaaattgacgaacaagga
aatgtagtcaatataaccaaacccagcaaccttagcactcttaaggttaacatcaacaaa
caaaaaaaggatgcatttcagattcttaaacctgaacttgatgtggatccagattcaaac
cctcattttgatgagagaatgggtataaataaaactaaactgctgaggccaaagagaatg
agtttccagttcgttgaggaagggaaatggtcgaaggaggctgaaaccttaaaattgagg
agtaaatttggagaggcacaagcgaaagaacgaagagaaaagcaggcacagttggccaag
gcaaaggctgcacctgatataaatccaaatttgatcgaggtttcagagagagtggtgaag
gaaaaaacaaaagacccaattcctgaaattgagtggtgggatgtcccgcttttgcaatcc
ggtgcgtacaaggatttgggagatggttttgtggccgatgacaaattgagaaaggacaag
attaccatatacgtggagcatcctcgtcctattgaacctcctgccgagccagctctcccc
cctcctcaacccctaaagctaacaaagaaggagcagaagaaactccgtacacagcgtcgt
ctagcaaaggagaaagatagacaggaaatgattagacaaggcctgatagaaccacctaaa
ccgaaagttaaaatgagcaatttaatgaaagttcttggctcagaagcaacccaagatcct
actaaacttgagaaagagattcgtgctgcagctgctgagagggagcaagctcacatagat
cgaaatattgcacgaaaactcacccctgcagagcgccgtgagaagaaagaacgtaaacta
tttgacgattcaaattcactcgagacatttgtgtctgtttacaagatcaacgatctatca
cacccccaggcccggtttaaagttgacgttaatgctagagagaaccgattgacagggtgt
gctgtgatatgcgatggcatcagtgttctggtcgttgaagggggtagcaagtccatcaag
aggtacgcaaaacttatgctcaggcgtataaattgggctgcttctgtgaaagaggaggaa
gaggaggaaaatgacgataaaccccttaacaaatgttccttggtatggcaaggaagtgtt
gccaaatctagcttcaatagattttccatccaggagtgcatgactgaggcagctgctagg
aagattttcgctgatgccggtgtcggtcattactgggattttgctattaacttctccgac
gatcaattataa
DBGET
integrated database retrieval system