Cucumis sativus (cucumber): 101219585
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Entry
101219585 CDS
T02486
Name
(RefSeq) phytochrome A
KO
K12120
phytochrome A
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
101219585
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_9
PAS_4
HisKA
PAS_8
Motif
Other DBs
NCBI-GeneID:
101219585
NCBI-ProteinID:
XP_031742642
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Position
6:complement(20015706..20020204)
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AA seq
1148 aa
AA seq
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MSSTSRPSQASRNTAGGSSSSSQSRHSSRILTQTSIDAKLQSHFEQSGSSFDYSTSIHLT
NNPTAAPPATTTTAYLQQIQISNLIQPFGCLLALHPTTLKLIAFSQNAPEMLTTVAHTVP
DGDNHPLLAIGTDLRGIFTAPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVT
GSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLVRLCDTMVQEVFELTG
YDRVMAYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRA
KHVKVIQDQNLDFDLTLCGSTLRAPHCCHLQYMENMDSIASLVMAIVVNEEEEEENFDQS
NNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILE
KNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQD
IASWILEYHMDSTGLSTDSLYDAGYPGALALGDVVCGMAAVRISSNDMIFWFRSHTASEI
RWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDR
DDHMSEIHRKSIQTTLSDLKILDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNS
KIAELTGLSVDKAIGKNLLTLVKDSSVEIVKKMLVLALQGQEEKNVQFEIKTHNVDINSG
SISLIVNACASKDLSENVVGVCFVAQDITCQKIVMDKFTKLQGDYKAIVQNPNPLIPPIF
GLDEFGWCTEWNLAMTKLSGWSRESVVNKMLLGEVFGTQLNNSSSCCCQLKNQEAFVNLG
IVLNNAMSGQDPEKNISFGFYGRNGMFVECLLCVNKILDRDGAVIGVFCFLQLASQELQQ
ALSIQKLCERTASNRLKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQ
RQISKVLDESHDLDHIIQGVIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEVGEEI
MCETLYGDNLRVQQIMADFLLISVHYAPTGGQLMLSTTFTNKDHFRNSLHLLHLEFRITY
VGGGIPESLLNEMFGNDNMDHEDSSEEGYSLFISRKLVKMMNGDVRYVREAAKSTFIITL
QLAAAAHK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaacaagtagaccaagccaagcttccaggaacaccgcaggaggatcctcttct
tcctcacaatcaagacacagctccagaatcctcactcaaacctccatagatgcaaagctt
caatcccactttgagcaatccggttcttccttcgactactccacgtcaatccatctcacc
aacaacccaactgccgcaccgcctgccaccaccaccacagcataccttcaacaaatccaa
atatccaacctcatccaaccctttggctgcctcttagccctccaccccaccaccctcaaa
ctcattgccttcagccaaaatgctcccgaaatgctcaccaccgtcgctcacaccgtccct
gacggcgacaaccaccccctcctcgccattggcaccgacctccgaggcatcttcaccgcc
cccactgccaccgccctcctcaaggcccttgccttccccgacgtcaccctcctcaaccct
attctcgtccactccaagtcctcagggaagcccttttacgccattctccatcgcgtcacc
ggtagccttatcatcgactttgaacctctcaaacccgaccaagtccccgtcactgctgca
ggagctcttcaatcctataagctcgcggccaaagccatcactcgtctccaggctctcccc
agtgggagcctggttagactgtgtgacactatggttcaagaagtgtttgagttgacgggt
tacgatagagtgatggcttataagtttcatgatgatgatcatggagaggttttttccgag
gttacaaagcctggcctcgaaccttatcttggtttgcattatccagccactgacattcct
caggctgcaagatttttgttcatgaagaacaaggttagaatgattgtggattgtagagcc
aaacatgtgaaggtcattcaagatcaaaatcttgattttgatttgactttgtgtggctca
actttaagagctcctcattgttgccatttgcaatatatggagaatatggactctattgcc
tcattggttatggccattgtggtaaatgaagaagaagaagaagagaattttgatcaaagc
aacaacaatgatgcttctttgcaaaaacataagaggaaaagattgtggggtttggtagtt
tgtcacaacacaactcctagatttgtccctttccctcttagatatgcttgtgaatttcta
gctcaagtttttgccattcatgtcaacaaggaattggagttagagaatcaaattttggag
aaaaatatcttgagaacacaaacacttttatgtgacatgttaatgcgtgatgctccttta
gggattgtgtcaagaactcctaatataatggatcttgtcaaatctgatggagctgcatta
ttgtacaataacaaggtatggagattagggataacccctactgattttcatcttcaagat
attgcttcgtggattttggagtatcatatggattccactggtttgagtactgatagcttg
tatgatgccgggtaccccggcgcgcttgcacttggcgacgtggtgtgtgggatggctgct
gtgagaatatcttccaacgacatgattttctggtttcgatcgcacactgcatcggagatt
cggtggggtggggcgaagcatgagccgggtgagaaggatgatggaaggaaaatgcatcca
agatcatcttttaaggcctttcttgaagtggttaagacaaggagtttgccatggaaggac
tttgaaatggatgcaattcattctttgcaacttatactaagaaatacttttaaagataga
gatgatcatatgagtgagattcatagaaaatcaatacaaacaacactcagtgatcttaag
attcttgatgggaggcaagaattggaatcagtaacaagtgagatggttaggttgattgaa
acagccacagttccaattttggctgttgatgttgatgggcttgtgaatggttggaactca
aaaattgctgaattgactggactttcggttgacaaagccattggcaagaatttgctcaca
ttagtgaaagattcttctgttgaaattgtcaagaagatgttggtcttggcattgcaaggt
caagaggaaaaaaacgttcaattcgagataaaaacacacaacgtggacatcaattcgggc
tcgataagcctaatagtaaatgcttgtgcaagcaaagacttaagtgaaaatgtggtggga
gtatgctttgtagcacaagacataacatgtcaaaagatagtaatggacaaattcacaaaa
ctacaaggtgattacaaagccatagtacaaaaccctaacccactaatccctccaatattt
gggttggatgaatttggttggtgcacagaatggaacttagcaatgacaaaactaagtgga
tggtctcgtgaatcagttgtcaacaaaatgcttttaggagaagtttttggaacacaatta
aacaactcgtcatcatgttgttgccaactcaagaatcaagaagcatttgtgaatcttggg
attgtgttgaacaatgcaatgagtggacaagatcctgaaaagaatatttcatttggtttt
tatggaagaaatgggatgtttgtggaatgtctattatgtgtcaataagatattggataga
gatggtgcagttattggggttttttgtttcttgcaacttgcaagtcaagaattgcaacaa
gctttgagtattcaaaaattgtgtgagagaactgcttcaaataggttgaaggcattggga
tatatgaagaggcagattcaaaatccactgtgcgggattattttttcaaggaaaatgttg
caacaaactcagttgggagtggaacagaagcaacttttgatcaatagtgttaattgtcaa
aggcaaatctccaaggttcttgacgagtctcatgatcttgatcatattattcaaggagtg
attgaattagaaatggttgagttttcattatatgaagtattggtagtagcaataagtcaa
gtgatgatgaagagcaaaggaaaaggcattcaaatagaaaatgaagttggagaagagata
atgtgtgagacattatatggagacaatttgagagttcagcaaataatggctgatttcttg
ttgatatcagttcattatgcaccaacaggtggccaacttatgctttcaacaacttttact
aataaggatcattttaggaactcactacatcttcttcatcttgaattcaggataacatat
gttggaggaggcataccagaatcattgttgaatgagatgtttggaaatgataatatggat
catgaggattcatctgaagaaggttatagcctgttcataagtagaaaacttgtgaagatg
atgaatggagatgtgagatatgtgagagaagctgccaaatcaaccttcattataactctc
caacttgctgctgctgctcataagtaa
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