Cucumis sativus (cucumber): 101219939
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Entry
101219939 CDS
T02486
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101219939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101219939
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101219939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
Zn_ribbon_RanBP
GTP_EFTU_D4
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
101219939
NCBI-ProteinID:
XP_011652515
UniProt:
A0A0A0LGS3
LinkDB
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Position
3:38342243..38350007
Genome browser
AA seq
785 aa
AA seq
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MPRKVSHGLDYDDDYDDYDDYDYYDNDFDVEEKATEKIPVTKEEPKGHKLWRCSICTYDN
EDSFSVCDICGVLRIPLDNNRNTQDDRTVENICKDSGVSKMAKSLFASLPNQIPKRAVKL
QEQDDKIVEEREENIHKIGNIQGHLHEFHNAFSTCSHFHTNIVPFKFDIPSPDDVVSNGL
RSSKVGLKAANHNDFNSLIFSSDTTKISANNAALTSKSAHSASTLSQMSKSGNIGDKQLN
TKGSANSGISIGKKTMVIEELNTSISVTKNLQSRDNRSSGTSSSKSAGKFDSMDESSNPS
VDWERSQSLAGGLNNMVLNVKSAYANYISGIGKTSNPQYKHDKWMLPDKAVDTLTQLNLA
IVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKEAKSMGKGSFAYAWALDESAEERERGI
TMTVGVAFFDSKRYHIVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSK
GQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIP
LSAMANQNLVTAPSDVHFLSWYRGPNLLEAIDSLQPPTREFSKPLLMPICDVVRSLSLGQ
VSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVTLQGVEPSSV
MSGGVLCHPDFPVAAAKHLELKILTLEYATPILIGSQLEIHIHHVKEAARVARIVSLLDS
KTGKVTKKAPRCLSAKQSAVIEVVLQSPVCVEAFSTSRALGRVFLRTMGRTIAVGIVTQL
IGGSQ
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaggtgagccacgggttagattacgatgatgattacgacgactacgacgat
tacgattattatgataacgatttcgacgtagaagaaaaagcaacagaaaaaatacctgtg
actaaggaagaaccaaaagggcataagctttggcgatgctcgatttgcacttacgacaac
gaagacagtttttctgtctgtgatatatgtggggttctgcgcatccctctggacaacaac
agaaatactcaagatgatagaacagttgaaaacatctgcaaagactctggagtatcaaaa
atggccaagtctctctttgcatcgttgccaaatcagatacccaaaagggctgtaaaattg
caagaacaggatgataaaattgtggaggaaagagaagagaacatccacaagattggaaat
atccagggccatttgcatgaattccataatgcttttagtacctgtagtcatttccatact
aacatagtccctttcaagtttgatattccatccccagatgatgtggtttctaatggattg
cgttcctccaaagttggtttaaaagcagccaaccacaacgacttcaactctttaatattt
tcttcagacaccactaagatatctgcaaacaatgcagcattgacttcaaaaagtgcacat
agcgcgtctactttatcgcaaatgagtaaatcaggcaatataggagataaacagttgaat
accaaaggttcagccaactcagggatctcaattggaaaaaaaacaatggttattgaagaa
ctcaatacatcaattagtgtaacaaaaaatttacaatcacgtgataaccggtcatcaggc
acttcctcatcaaagtcagcaggcaaatttgacagcatggatgagagcagcaacccttct
gtggactgggaaaggtcccaaagtcttgccggtggtttgaacaacatggtcctaaatgtt
aaatctgcctatgcaaattatattagtgggattgggaaaacatcaaatccgcagtataag
catgataagtggatgctacctgataaggctgtagatacgctgactcagctgaatcttgcc
atagttggtcatgttgattctggaaaatctacactctcaggaagattgctgcacctattg
ggacgtgtatcccaaaaagaaatgcacaaatatgaaaaagaggcaaaatcaatgggcaag
ggctcctttgcttatgcctgggcactggatgagagtgcagaggaaagggagagaggaata
actatgactgttggtgttgctttttttgattccaaaagatatcatattgttgtgcttgat
tcccctggccataaagattttgttccaaacttgatatctggggccacacaagctgatgct
gcagttcttgttatcgatgcatctgttggtgcatttgaggctggtatggacagttcaaag
gggcaaacaagggaacatgtgcaattaatcaggagctttggtgtagatcagattatcgtt
gcagttaacaaaatggatgtggtggagtattccaaagatcgatatgagtttattaagctg
caactgggaacctttattcgttcatgtggttataaagattcatcattgtcttggattcca
ttgagtgccatggcaaatcagaatctggtgactgccccttctgatgtacattttttatcc
tggtaccgtggacctaatcttttggaggcaatagattctcttcaaccacccactcgagaa
ttctctaagccactgcttatgccgatatgcgacgttgttagatcactttcactaggacaa
gtgtctgcctgtggaaaattggaagctggagctctccagtctggatctaaggttctaatc
atgccatctggagataaagcaaccgtgcgaactttggaacgcaattctcaggcttgcaaa
atcgcaagagcgggggacaacgtgactgttactctacaaggagttgaaccaagtagcgtg
atgtctgggggtgtcctatgccatcctgatttcccggtcgctgctgcaaaacatttggaa
ttgaagattctcaccttggaatatgcaacaccgatattaataggatctcagttggaaatt
catatacaccatgtgaaggaggctgctagagttgcaagaatagtctcattgctcgattca
aagacggggaaggtcacgaagaaggcaccacgctgtctcagtgctaaacaaagcgcagtg
attgaggttgttttacaaagccctgtttgcgtcgaagcattctcaactagtcgagcactt
ggtcgggtatttctgagaacgatgggaagaaccatagccgtcggcattgtgacccaacta
atcggaggctctcaataa
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