Cucumis sativus (cucumber): 101220076
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Entry
101220076 CDS
T02486
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101220076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101220076
Spliceosome [BR:
csv03041
]
Complex A
U1 snRNP components
U1 related factors
101220076
Complex B
101220076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
101220076
NCBI-ProteinID:
XP_004150264
LinkDB
All DBs
Position
4:72252..92776
Genome browser
AA seq
1016 aa
AA seq
DB search
MANNPQYSGLQPLRPPVVGPMDQGRSFVPPMTAQQFRPAVPGPHSQQFVPLPSPHFQPLG
QGVPLMNAGMPPPPPQPQQSQFSQPVAHLPLRPCEPVHGTLPPQTIPLPVAQQNRQYTPE
LQQAQPLTQPAAIGMPGPGGSGTSLSASYSYGPPQNYNTTIVQPVPQSHAPVVSSGGQLG
SLVSVTPLNHSREQPYATSSVTSAANVLLMPSATAASSEWREHTSPDGRRYYYNKKTKIS
SWEKPFELMTAIERADASTNWKEFTSPEGRKYYYNKMTKESKWIIPEELKLARERVEKSS
TLGTEKEPVPLELPSVSTLEAPSTTADTQTTAKELASNALSVAAADLQTDKDASPGAVSS
VETNGGVQSPVNIVPSSCAISENDDSAGVVEVTTVEPRNDLNQSSAQDTENLTDGVSAQE
LEETKKDTSDEKVEFTLEERAIDQDTSAYPNKQEAKNAFKALLESANVGSDWTWDRAMRI
IINDKRYGALKTLGERKQAFNEFLGQRKKQEVEERRTKQKKAREEFRKMLEESTELTSSM
RWGKAESIFENDERFQAVERDRDRRDLFESFLEELKNKERAKAQEERSRNILEYRKFLES
CDFIKASSQWRKVQDRLEVDERCSRLEKIDRLEIFQEYLRDLEKEEEEQRKIQKEELRKA
ERKNRDEFRKMMEEHIAAGLLTPKIHWRDYCMKVKELPAYLAVAANTSGSTPKDLFEDVA
EELQKQYRDDKTRIKDAVKLRKVAISLSWTLDDFKAAISKDIGNPPVPDTNLKLVFDELL
ERAREKEEREAKKRKRLGDDFFNLLCSFKEISVYSNWEDSKSSFEGSQEYSAIEDEKLCK
EIFEEYIAQLKEHTKENENKRKEEKARKEREREERERRKEKHKKGEREKEDHFKKDGVDN
ENVDVSDTLELKENRRLDKERSKKQRKRRYSDEEYSDEDEAGHDRSKKSQSHKDRKKSRR
HGSAHESDGESRHRRHKRDHRNGSYKNLDHEELEDGECGDDGAIEVMMRKKLARFG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatcctcaatattcaggtttgcagccccttcggcctcctgttgttggtccc
atggatcaaggtagatcatttgttccacccatgacagctcagcagtttcgacctgcagtc
cctggacctcactcacagcagtttgttcccttgccttctccgcattttcagcctcttggc
cagggtgttcccttgatgaatgctggaatgccccctccgcctcctcaacctcaacaatcc
cagttttctcagccagtggctcacttacctttaagaccttgtgagccagttcacgggaca
ttaccaccccaaacaattccactgccagtggctcagcaaaacaggcaatatactcctgaa
ttgcaacaagcacagcctctcactcaacctgctgctattgggatgcctggtccaggtggt
tctggaacatctttatctgcatcatacagttatgggccacctcaaaattacaataccact
attgttcaacctgtgccccaatcacatgcaccggttgtttcttctggaggccagctgggg
agtttggtttcagtcacacctctgaatcactcaagagaacagccttatgctacctcctct
gtaacttcagcagccaatgttttgctgatgccttctgctacagcagcttcatcagagtgg
agagaacatacatctcctgacggtagaagatattattacaacaagaagaccaaaatatct
agctgggagaagccttttgaattgatgactgcaatagagagggcagatgcatcaaccaac
tggaaagagttcacaagtcctgaaggaagaaaatattattataacaagatgaccaaagaa
tctaaatggataattcccgaggaactgaagttggctcgggagagagtagagaagtcatct
actctaggaactgagaaggaacctgttcctcttgaactcccttctgtttctactctggaa
gcaccatctactactgctgatactcaaactactgccaaagaactagcatctaatgcattg
tcagtagctgctgccgatttacaaactgataaggatgcttctcctggtgctgtttcaagt
gtagaaacaaatggtggagttcagtcacctgtcaatatagttccttctagttgtgctatc
tcagaaaatgacgactctgctggtgtcgtggaggttactactgtagaacccaggaatgat
ttgaaccagtcctctgctcaggatactgagaatttgacagatggtgtttctgcccaagaa
cttgaggaaactaagaaggatacatcagatgagaaagttgaatttacattggaagagaga
gctattgatcaggacacttcggcttatccaaataagcaggaagctaaaaatgcatttaaa
gccctcctggagtctgctaatgttggttctgattggacttgggatcgggccatgagaatt
ataattaatgacaagaggtatggtgctctgaaaacacttggggaacggaagcaggctttc
aatgagttccttggtcaaagaaaaaaacaggaggtggaggaaagacgaaccaaacagaaa
aaagcgcgggaagaattcagaaagatgctggaagagtcaacagagctcacttcatctatg
agatggggcaaagctgagtcaatatttgaaaatgatgagcgattccaagcagttgaaaga
gatagggaccgacgtgatctctttgagagcttcttggaggaactcaagaacaaggagcgt
gcaaaagcacaggaggagcgtagtcgaaacattctggaatatagaaaatttttagaatct
tgtgactttatcaaggctagtagccagtggcgtaaagtacaagatcggttagaggttgat
gaaagatgctcacgccttgaaaaaattgatcgtttggaaatattccaggaatacctacgt
gacttagaaaaggaagaggaggagcagagaaaaatacagaaggaagaattgagaaaagca
gaacgtaaaaaccgtgacgagtttcgcaagatgatggaagaacacattgctgctgggctt
cttactcctaaaattcattggcgtgactactgcatgaaggttaaagagctacctgcatat
ttggctgttgctgcaaatacttctggttcaactccaaaagatttgtttgaagatgttgcg
gaagagctacaaaaacaatatcgtgatgacaaaactagaataaaagatgctgtgaagctg
aggaaggttgcaatatcattgtcatggacacttgatgactttaaagctgccatttccaaa
gatatcgggaatcctccagtaccagacaccaacttaaagttagtatttgatgagttgctc
gaacgggctagggagaaggaggagagagaagctaagaagcgtaaacgtcttggggatgat
ttttttaatcttttatgttcatttaaggaaatatctgtatattccaattgggaagactca
aaatcctcttttgaaggaagccaagaatacagtgccattgaggatgagaaactatgtaag
gaaatatttgaggagtacattgcgcaactgaaggaacacacaaaagaaaatgaaaataag
cgaaaggaagaaaaggcaagaaaggaaagagagagagaagaaagagagagaaggaaggag
aaacacaaaaaaggagaaagagaaaaagaggatcacttcaagaaagatggagtagacaat
gaaaatgttgatgtttcagataccctcgaattgaaagagaataggcgattggacaaagaa
cgtagtaagaaacaaaggaagaggcgatatagtgatgaggaatactcggatgaagatgaa
gcaggccatgatcgatccaagaaatcccaatcacataaagaccggaagaagtctaggcgg
catggatctgctcatgagtcagatggtgaaagtagacatagaaggcacaagagagatcat
cgaaatggttcatataagaatttagatcacgaggagcttgaagatggggaatgtggcgac
gatggggcaattgaagtcatgatgagaaagaaacttgcaaggtttggatga
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