Cucumis sativus (cucumber): 101220537
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Entry
101220537 CDS
T02486
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csv03009
]
101220537
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101220537
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
Pre-60S particles
Helicases
101220537
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Tn7_TnsA-like_N
Motif
Other DBs
NCBI-GeneID:
101220537
NCBI-ProteinID:
XP_004148172
UniProt:
A0A0A0KSG4
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All DBs
Position
5:complement(6479589..6483769)
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AA seq
587 aa
AA seq
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MDGDDVNRALTTTRFSDLQPPLSPPVIDALTQSGFQFCTPVQAATIPLLCSHKDVAVDAA
TGSGKTLAFVVPVVEILRRCSSRPKPHHVMGIIISPTRELSSQIYEVARPFVSTLSNFKA
VLLVGGADVKVDMKVIEEEGANLLIGTPGRLFDIMDRIENLDFRNFEVLILDEADRLLDM
GFQKQITSIISRLPKLRRTGLFSATQTEAVEELSKAGLRNPIRVEVKAESKPGPLSSTQL
ASSKTPSSLHIEYLECEADKKSTQLVDILIKNKSKKIIVYFMTCACVDYWGVVLPQLTGL
KGLFLIPLHGKMKQTAREKALASFVSLSSGVLLCTDVAARGLDIPGVDCIVQYDPPQDPN
VFVHRVGRTARLGREGSAIVFLLPKEEAYIEFLSIRRVPIQEKIYCSDASDIIPQIRTAA
KRDRDVMEKGVKAFVSFIRAYKEHHCSFIFRWKELEVGKLAMGYGLLQLPLMPEVKHHSL
STDGFVPVEDINFEEVKYKDKSREKQRKKNLQAKKEAQKKLPKPEPKKTPNVAAPILRKK
TARQRRATQTAEDEDELAHEYRLLKKLKKGTIDETEYAKLTGTEELL
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgacgatgtaaaccgagccttaaccaccacacgcttctccgatctccaacct
cccctctctccacctgttattgatgctttgactcaatctggttttcaattctgtactcca
gttcaagccgccacaattccattgctatgcagccacaaggacgtcgccgttgatgccgcc
actggttccggcaaaacccttgcgtttgtagtaccggtcgtcgaaatcctccgtcgatgt
tctagtcgccccaaacctcaccatgtaatgggtattataatttcgccgacgagggagctt
tcatcacaaatttacgaggttgctcgtcctttcgtttctacattgtcgaatttcaaagcg
gtgctactcgttggaggcgctgatgtgaaagtagacatgaaggttatagaagaagaaggt
gccaacttgttgattggaactccaggaaggttatttgatataatggatcgtatcgagaac
ttggatttccggaactttgaggttctgatattggatgaggcagataggctcctggacatg
ggattccagaagcagataacttcaattatatctcgtttgcctaagcttcgtaggactggt
ctcttttcggctacacaaactgaggcagttgaagagctttcaaaagcagggctaagaaat
cctatcagggtcgaagtaaaggcagaatcaaagcccggtccattgtcatcaacacaactt
gcctcttcaaagactccatccagtcttcatattgagtatttggaatgcgaagcagacaag
aagtccacccaacttgttgatattcttattaagaacaaatccaaaaaaatcatagtttac
ttcatgacttgtgcatgtgttgactattggggagttgttctacctcagcttactggtttg
aaaggtttattcttgatccctctgcatgggaaaatgaaacagactgccagggagaaagca
ctagcctcatttgtatccctttcaagtggtgttcttctatgcacagatgttgcagcccgt
ggacttgacattcctggcgttgattgtattgttcagtatgatcctccccaagatcctaat
gtctttgtacatagagttggtcggactgctcgattgggtagagaaggaagtgccattgtt
tttcttttgccgaaggaagaagcttatatagaatttctttccataagaagggttcctata
caagagaaaatttattgtagtgatgcatcggatataattccacagatacgaacagcggca
aaaagggatcgtgatgtcatggagaagggcgttaaggcatttgtttcttttatacgtgct
tataaagaacaccactgctccttcattttcaggtggaaagaacttgaagtagggaagttg
gccatgggttatggtctgttgcagctgcctttgatgcctgaggtgaagcaccactcgctt
tcgactgacggttttgttccagttgaagatattaactttgaggaggttaaatacaaagac
aaatctcgggaaaaacaacggaagaaaaaccttcaagctaagaaggaagcgcaaaagaaa
ctgccaaaacctgaacccaaaaagacccccaatgttgcagctcccatcttgagaaagaaa
acagcccgacagagacgtgctacacagacagctgaagacgaggatgagttggcacacgaa
tatcgattgttgaaaaagctcaaaaagggaaccattgatgaaaccgaatatgcaaaacta
actgggacagaggagctactatga
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