Cucumis sativus (cucumber): 101220606
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Entry
101220606 CDS
T02486
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03020
RNA polymerase
csv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101220606
09124 Replication and repair
03420 Nucleotide excision repair
101220606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101220606
03400 DNA repair and recombination proteins [BR:
csv03400
]
101220606
Enzymes [BR:
csv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101220606
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101220606
DNA repair and recombination proteins [BR:
csv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101220606
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
101220606
NCBI-ProteinID:
XP_004146161
UniProt:
A0A0A0L655
LinkDB
All DBs
Position
3:complement(472403..481844)
Genome browser
AA seq
1853 aa
AA seq
DB search
MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI
EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN
LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN
PQSAKYSPSQAYLPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN
TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNN
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgattcccttactctccggcagaggttgccaaagtcagaatggttcagttt
ggcattcttagtcccgacgagattaggcaaatgtccgtggtacagattgagcacggtgaa
accacagagaggggtaagccaaaagtagctggtttgagtgacccacgacttggtacaatc
gacagaaaaatgaagtgtgaaacttgcactgcaaatatggctgagtgtcctgggcacttt
gggcacctcgagcttgccaaaccaatgttccatattgggtttatgaagaccgtgctcact
attatgcgttctgtgtgcttcaattgctcaaagattctagttgacgaggaagaccctaag
tttaaacaagcattgcgaataaagaatcctaagaataggcttagaaagattttggatgcc
tgcaagaacaaaaccaagtgtgagggtggcgatgaaatcgatgttcaaggtcaagattca
gatcaaccagtcaaaaagagtcggggtggctgtggtgctcagcagcctaagatctcaatt
gagggtatgaagatgactgcagagtacaaggcccaaaggaaaaaaaatgatgatccggag
cagctgcctgagcctgtggaaagaaaacaaacacttactgctgaaagggttcttggcatt
ctgaaaagaataactgatgaggattgcaaactcttgggcctcaatccaaagtatgctcgg
cctgactggatgattctgcaagtccttccaattccgcctcctcctgtgagaccatcagtt
atgatggacacctcatctagaagtgaggacgacctaactcatcagttggcaatgattata
aggcacaacgaaaacctcaggagacaagagagaaatggttctcctgcacatatcatttca
gagtttgcgcaactactgcagtttcatatagccacatattttgataatgaattacctgga
ctacccagggccacacagagatctgggagacccattaaatccatttgtagcaggctcaag
gcaaaggaaggtcggataagaggaaatttgatgggaaaacgtgtagatttttcagcacga
accgttataacacctgatccaaccattaatattgatgaactgggggtaccttggagtatt
gctttgaatcttacgtatccagagactgtgacaccatataatatagaaaggttaaaggaa
cttgttgaatatggaccccatcctccacctggtaaaactggtgccaagtacatcatacga
gatgatgggcagaggcttgatcttcgttatcttaaaaaaagtagtgatcatcatttggag
cttgggtacaaggtggagcgtcatttaaacgatggtgattttgtactttttaatcgtcag
cctagtctccataaaatgtctattatgggacacagaatcaagatcatgccctactcaact
ttccgtctaaatttatctgtcacatcaccttacaatgctgattttgatggtgatgaaatg
aatatgcatgttcctcagtcatttgagacaagggcagaagtattggaactcatgatggtt
cccaaatgcattgtgtcacctcagtcgaaccgtcctgtaatgggtatagtgcaagatact
ctcctaggatgccgtaaaattacaaaaagggacacctttataacgaaggatgttttcatg
aatactttgatgtggtgggaggattttgacgggaaaattcctgcccctgcgattttaaag
ccacaacctctttggacgggaaagcaagtttttaatcttattataccaaagcagattaat
ctcacgagaacttctgcctggcattctgaatccgaaactggacacataactcctggagat
acttttgttaggattgagaagggggagctactttctggaacactttgcaagaaggcactt
ggaacttcaactggaagtcttatacatgttatttgggaggaggttggtccggatgcagcc
cgaaaatttctgggtcatactcagtggctcgtcaattactggcttttgcagaatgctttt
agcattgggattggggatacaattgctgatgcagcaaccatggagaaaattaatgaaact
atctctgctgctaaaaacgaagtgaaaaaccttataaagaaagcccaagaacggagttta
gagcctgaacctggacgaacaatgatggattcatttgaaaacaaagtgaatcaagtcctg
aataaggctcgtgacgatgctggtagtagtgcgcaaaaaagtttgtcagagagtaacaat
ttgaaagctatggtcactgcaggatccaagggaagttttatcaacatctcccagatgact
gcttgtgtggggcagcagaatgttgaagggaagcgaataccatttggtttcattgatcga
acattgccccatttcactaaagatgattatgggcctgaaagtcgtggctttgttgagaac
tcatatcttcgaggtttgactccacaggagttcttttttcatgctatgggtggtagggaa
ggtcttattgatactgcagtcaagacctctgaaacagggtacatacagaggaggctggtg
aaggccatggaggatattatggttaaatatgatgggactgttagaaactcattgggtgat
gttattcagtttctttatggtgaagatggtatggacgctgtttggatcgaatctcagaaa
ctcgattctttgaaaatgaagaaaaaggaatttgagaggatcttcaggtatgagtttgaa
gatgaaaactggaagccaaattacatgttgccagagcatgtagaagatttgaaaaccatc
agagaattccgcaatgtgtttgaggctgaagttcaaaagcttgaagcggacaggtatcaa
ttaggaacagaaattgcaactacaggtgaaaactcttggccaatgccagttaacctgaaa
aggctaattcagaatgcacagaaaactttcaagattgactttcgaagggcttctgacatg
catcctatggaaattgttgaagctattgacaaacttcaagagaggctgaaggttgttcct
ggtgaagatcctctaagtgtggaggctcaaaagaatgccacccttttcttcaatatatta
ctccgaagcacttttgctagcaaaagggttttggatgaatacaggcttacccgtgaagca
tttgagtgggttattggagaaatagaatcacgcttccttcagtcactagtagcacctggt
gaaatgattggctgtgttgctgcacagtccattggagagccggcaactcagatgactctt
aataccttccattatgctggtgttagtgcgaagaatgtcactcttggtgttcccagattg
agggaaatcattaatgtagccaagagaatcaaaacaccttctctttctgtctatctaaaa
cccgaagctaataaaaccaaggaaagggcgaagactgttcaatgtgctttggagtatact
actcttagaagtgttacacaagcgacggaagtatggtacgatcctgaccccatgagcacg
attattgaagaggacattgattttgtaaaatcctattatgagatgccagatgaggaaatt
gctcctgagaaaatctccccatggttgcttcgaatagagttgaatcgtgaaatgatggtc
gataagaaactaagcatggcgaatattgccgagaagatcaaccttgaatttgacgacgat
ttgacttgcatatttaatgatgataatgctgagaagctgatacttcgtatccgtatcatg
aatgatgaagctccaaagggggagttgactgatgaatcagctgaagacgatgtgttcttg
aagaaaattgagagtaatatgctaactgaaatggctcttcgaggaataccagacatcaac
aaggttttcattaaatgtggtaaagtgaataagtttgatgagaatgagggttttaaacca
gagatggagtggatgttggatacagaaggtgtcaatcttttagccgtcatgacacatgaa
gatgttgatgcgaggaggaccacaagcaaccatttgattgaagttattgaagttcttgga
attgaagcagttcggcgttctcttctggatgaattgcgtgttgttatatcctttgatggt
tcttatgttaattacagacatcttgccatcctttgtgacaccatgacttatcgtggccac
ttgatggctattactcgtcatggtattaatagaaatgatactggaccaatgatgagatgc
tcatttgaagaaactgtggatatcttacttgatgctgcagtatatgctgaaactgaccac
ttaaggggtgtaactgaaaatataatgttgggtcagctggctcccataggaacaggaggc
tgtgctctgtatctcaacgatgagatgttgaagaatgctattgaactccagctgcctagt
tacattgacggtctggattttggcatgaccccttcccgttccccaatctcaggaactcct
tatcatgaagggatgatgtctcctaattatttgttgagcccaaatctccgcctgtcacct
atcagcgacgctcaattttcaccctatgtaggaggcatggcattctctcctacgtcatct
ccaggctatagcccatcatctccgggctacagtccatcatcccctggctatagtcccaca
tctcctggttatagtcctacttctccagggtacagccctacctctccaggctacagtcct
acatctccaacttacagtcctagttcgccgggctatagcccaactagtcctgcatattct
cctacaagtccatcttattcacccacctctcccagttacagcccaacctctccaagttac
agccccacctctcctagttacagccccacatcaccaagttacagccccacttccccaagt
tacagccccacttcgcctgcttacagccccacttcacctgcttacagtcccacttcacct
gcatacagcccaacttcaccctcctacagcccaacttcgccctcctacagcccaacttca
ccctcctacagcccaacatcaccctcctacagcccaacatcaccgtcttacagtcccaca
tcaccttcgtacagccccacctctccagcatatagccccacctcccctggctatagtccc
acgtcaccgagctatagccccacttctcctagctatagtccaacctcacctagttataat
cctcaatcagctaaatacagcccatcacaggcgtacttacccagtagtccacggttgtct
ccttcaagtccatatagcccaacctcgcccaattacagcccaacatcaccatcatattca
cctacttctccagcatattctccatccagcccaacctacagtcctagcagtccatataat
acaggacccagcccagactacagccctagttctccacagtacagtccaagtgcagggtac
tcacctactgctcctgggtattctccatcatctactagtcagtacactccacaaacaagt
gacaaggatgataggagtagaaaggatgataggaacaattga
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integrated database retrieval system
