Cucumis sativus (cucumber): 101220693
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Entry
101220693 CDS
T02486
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101220693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101220693
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
101220693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_11
TPR_1
TPR_16
TPR_14
TPR_8
TPR_9
TPR_19
TPR_12
TPR_7
ARM_TT21_C
BTAD
TPR_10
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
101220693
NCBI-ProteinID:
XP_011654295
UniProt:
A0A0A0L4Q4
LinkDB
All DBs
Position
4:26380138..26391373
Genome browser
AA seq
1184 aa
AA seq
DB search
MEEIALEKEHGGESESSCLTARQLQEAVDAHPDDPSSHFKLGIFMWENGASHDKAAAADH
FLKSAKLDPGNAAAFKYLGDYYATSSVDIQRALKCYQRAVSLDVDDFHSGEALCDLLHHE
GKESIEVAVCKEASSKSPKAFWAFRRLGYLQVYQNKWTEAVSSLQHAIRGYPHCADLWEA
LGLAYQRLGRFTAAIKSYARAIEIEGDRILAWIESGNIFLMLGLFKKGVEHFQQALEISP
KSITAQFGLSSGLLGWAKEYINRGAFKWASFLLEEASKVARGSTHLAGNSSCIWKLLGDI
QHTYAKCYPWMEDNWGQCSESFRTSILSWKQTRMLALFSAKSSYQQALHLAPWEANIYTD
IAITLDNISSFNDNSGPGFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHAALKQHAF
IRALQLDGSLAGAWAYLGKLYWNRCEKQLARQAFDYARSIDPSLALPWAGMSADLNVRES
TSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNL
NGLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQE
CENLSTEGMLDIEGLQVYAFSLWKLGKNDQALSAVRTLASGISTMESTRTAASIDFICRL
LCSISGLDSAINSITKMPTNFFQSSKLSFVVAAVHALDQGDRLEAIVLSSRSCLQSHEEI
TRMHSLIALSKLIKYRTNNCLGFLNGVMHLRKALHAYPSSSSIRNLLGYLLLSNEERDDN
HTATRCCNMLYGLDQQNKGLKSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCRNGIGTI
RQLQKCLRQEPWNYDARYLLILNILQKAREERFPCHLCVTIGRLILVAFFDEAYFTKDVS
HQYKKFQLLLCASEISLQGGDQIKCINYAKAASSMSLPEIYLFYAHLLLCRAYAAENDSN
NLRKEFMKCLNLKTDNYLGCVCLKFIASRYELHDESNILELSLKKWSAESKNLQHMVIPM
FVDGLISFRSQDFMAAEKYFAQACFSGHDGCLFLCHGVTCMELAKKLCSPHFLRLAVNSL
LKAQVISVPIPIVSIMLAQAEGSLGLKENWESGLRLEWFSWPPDTRSAEILFQMHLLAKQ
SKVDSDQLRVELCQSPLRWVLRAIHVNPSCVRYWNVLQSLWNEG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggaagagattgcgctagaaaaagaacacggaggagaatcggagtcctcttgtcttaca
gcaagacaattgcaagaagcagttgacgctcatcctgatgatccctcatcccatttcaaa
ctcgggattttcatgtgggaaaatggagcaagccacgataaggcggctgctgccgatcat
tttctgaaatcagcgaaattagaccctgggaatgctgccgctttcaagtatctaggggat
tattacgccacatcttctgtcgatatccaaagggctctcaagtgctaccaaagagctgtc
agtctcgacgtcgacgatttccactctggagaagcattgtgcgatctgttgcatcacgaa
ggaaaggagagtatagaggttgccgtatgcaaagaggcttcctctaagtcacccaaggcc
ttctgggctttccggaggttgggatatttgcaggtttatcaaaataaatggactgaagct
gtctcaagtcttcagcatgccattcgaggatatcctcattgtgctgatttgtgggaagcc
ctgggtcttgcatatcagcgacttggcaggtttactgctgcaattaagtcttatgcacgg
gctattgaaattgaaggagatagaattctcgcttggattgagagtggaaacatcttcttg
atgcttggtttgttcaaaaaaggagttgaacactttcagcaagctctagagatatcacct
aaaagtattactgcacaatttgggctctcttcagggcttcttggttgggcgaaggaatac
attaataggggggcatttaaatgggcatcctttctattagaggaagcatctaaagttgca
agaggaagtactcatttagctggaaactcatcatgtatctggaagttgcttggagatatt
cagcacacgtatgcaaaatgttatccatggatggaggacaactggggacaatgctcagaa
tcctttagaacttctatcctttcctggaagcagactcgcatgttggctttattttctgcc
aaaagttcctatcagcaagctctgcacttggctccgtgggaagctaacatttacacagat
attgctattactttagataatatttcatctttcaatgataattctggacctggattcaat
tcctggcagatatctgaaaagatgacactaggggccttgatgctcgagggtgacaatcat
gaattctgggtggcaatgggatgcatctctaaccatgctgcgttgaagcaacatgctttt
ataagggcattgcagttagatggatctttagctggagcatgggcttatcttgggaagcta
tactggaataggtgcgagaagcaattggcgagacaggcttttgattatgccagaagtata
gatccttctctagcattaccctgggcgggcatgtcagctgatttgaacgttagggagtcc
acatcagatgaagcatttgagagctgtttgagagctgcacaaatactacccgtggcggaa
ttccaaattggtcttgccaagctttctctgcaggcaggccatctttcatctccacaggtg
tttggagctatacgtcaagctgttcaactggcaccttgttaccccgaatcctataatcta
aatggattagcttttgaggcacaattagattatcaatctgctgttgctgcttatcgtttg
gcacacctcacaattagccacttttcagatagagttccaaggtctcatgtcagagatata
tcgatcaacttagcgagatcactctgcatggtaggaaatttctttgaagctttgcaggaa
tgtgaaaatttgagtacagaaggcatgctcgacattgaaggtttgcaggtttatgctttc
tctctatggaaactaggaaagaacgaccaggcccttagtgctgtgagaacacttgcttct
ggcatctctaccatggaaagcacacgtactgctgcatctattgatttcatatgcagattg
ttgtgttcaatatctggattggactctgcaattaacagtattacgaagatgccgaccaat
tttttccagagttcaaaattgagttttgtagtggctgctgttcatgcccttgatcagggt
gatcggcttgaggccattgtcttaagcagccgttcctgcctccaatctcatgaagaaatt
actagaatgcacagtttgattgctctttctaagctgatcaaatatcgaacaaataactgc
cttggattcctcaatggagtgatgcatcttcgaaaagcacttcatgcataccccagcagt
agttcgatcaggaacttgcttggttatcttttgttgtccaacgaagaaagggatgacaat
cacacagctactaggtgctgcaacatgttgtatggtttggaccaacagaacaaaggtctg
aaatctgcgtatgaaattcatggtgctggagctgtggcctgctatacaattggcacgagt
catccgaggttttcgttcccaacatgttcatatcagtgccggaacgggattgggaccatc
cggcaacttcaaaaatgcttacgtcaagagccatggaattatgatgctcgatatcttctt
atactaaacattctgcaaaaggcacgtgaagaaagatttccctgtcatctgtgtgtgact
attgggcgactaatcttggttgccttttttgatgaggcatattttacgaaagatgtgtct
catcaatataagaagtttcagcttctactttgtgcctctgagatcagtttgcaaggtggt
gaccaaattaaatgcatcaactatgccaaagctgcttcctctatgtcacttcctgaaatt
tatcttttttatgcgcacttgttactgtgccgagcctatgctgcagaaaatgattctaac
aacctccgtaaagagttcatgaaatgtttgaatttgaagacagataactatcttggatgt
gtatgtcttaaattcattgcatctcgatacgagcttcacgatgaatccaacatcttagaa
cttagtttgaaaaaatggtcggcagagagcaagaatctgcaacacatggtaatacccatg
tttgtcgatggtttgatatcttttaggagtcaggattttatggctgcagagaagtatttt
gcacaagcttgtttttctggacatgatggctgtctcttcctctgtcatggtgtaacctgc
atggaacttgcgaagaagctttgcagtcctcattttttgaggctggctgtgaacagtctc
cttaaagctcaagtgatttctgttccaataccaattgtctcgatcatgctggcacaagca
gaagggagtcttggtttgaaggaaaattgggagtcaggccttcgtttggaatggttctcg
tggccaccagatacgaggtctgcggagatcttgtttcaaatgcatctgcttgcaaaacag
tcaaaagttgattctgatcaattgagggttgaattatgtcagtctcctctgagatgggtt
cttcgtgctatccatgtaaacccttcttgtgtgagatattggaatgtgctccaaagcttg
tggaatgagggatga
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