Cucumis sativus (cucumber): 101221790
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Entry
101221790 CDS
T02486
Name
(RefSeq) uncharacterized protein LOC101221790 isoform X3
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101221790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csv03000
]
101221790
03019 Messenger RNA biogenesis [BR:
csv03019
]
101221790
04121 Ubiquitin system [BR:
csv04121
]
101221790
Enzymes [BR:
csv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101221790
Transcription factors [BR:
csv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
101221790
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101221790
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101221790
Ubiquitin system [BR:
csv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101221790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nab2-like_zf-CCCH_
Baculo_IE-1
PcfJ
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
101221790
NCBI-ProteinID:
XP_011657227
LinkDB
All DBs
Position
6:complement(14828967..14839487)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSDGGEKTCPLCAEEMDPTDQQLKPCKCGYEICVWCWHHIMEMAAKDDTEGRCPACRAIY
DKEKIVGMASSCGRLAAEISVEKKVKSQKAKAKSSEGRKQLSSVRVIQRNLVYIVGLPLN
LADEDLLQRREYFGQYGKVLKVSMSRTATGVIQQFPNNTCSVYITYSREEEAVRCIQNVH
QFVLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIISAYTRSRV
QQITGASNNLQRRSGSVLPPPMDDYCSINSSNGKPIVKNTPSNPSSTVRGSPPNGSSDKT
IALPAAASWGTRGSNIQGPVTSLPSPNGPPKKPDAANSILSFPPAVAGISSAPTVHSEAG
KRLALNENYISNNTKGQQESLKSLKPPVSMDCQSFSTDRHDSPEELPTSVSLSCSVVGTP
ATKDSQKIMALSPSISASTLHIEDSCSSCPEAGATCDGLIQNMSSDMSTASIDRDDIDDQ
SDLRPNALLSDHDLIKASGDHNLQEQFSGQSIAASLDSTDAAWKGDDVVNCMPFSREERD
WRSDFQREVVNATELEEDVISFNSQRLKDPEIMSPSTRLPGWASTFHALNGSTSHPLWPD
AANGVATSLATDLSFVDKQFNDNSSLNSPSIPPVFSSQLENGVNTSGQALHTLRHIVGND
PSNINADSLFVDKQFNDSSHFRSSNISTAINSNMESVISSSAATDMPHGNSFLLHNEGSG
RHVGRSSGDILNANSNGFVDNGENSIISNILSMDFNMWDNTLTSQNLAMLLGETDKQSPS
SRKVQSNNQSRFSFARQEDSKGQDFRIQPSLDIIGQMQRNQSLRRDFSENGNVHLDKFHN
SGGFYSNNYDGSVSHSSNQSLNSSNKLSDSFTAVSRAQISAPPGFSVPSRVPPPGFSSHD
RVDHVSDSLSGNHLLEASSLLRNSYQANQTGNNISTGDIEFMDPAILAVGKGRRQIGLNN
TGLDIRTPFSPSLGTFDNEASLQLLMQRSLNPQQRYTDVGDGFSHLGDSYGISSRLVDQS
QVNNLSNFAQMSLQHSRNGLMSHGHWDGWNEVQGGNNIGVADILRNDRLGYNKYYAGYED
SKFRMPSSSDLYNRTFGM
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacggaggagaaaaaacttgcccactttgcgctgaagagatggatccaaccgat
cagcaattgaaaccatgcaaatgtggatatgagatatgtgtttggtgctggcatcatatt
atggaaatggctgcgaaggatgacactgagggtcgatgtcctgcatgtcgtgctatatat
gacaaggaaaaaattgtaggcatggcatcaagctgtgggagactggctgctgaaatcagc
gtggaaaaaaaggtgaagtcacaaaaagcgaaagccaaatcatctgaaggacgaaagcag
cttagcagtgtacgcgtgattcaacggaatcttgtatatattgttgggctgcctcttaat
ctggcagatgaagatcttcttcagcgtagagaatattttggtcagtatggaaaagttcta
aaagtgtctatgtcccgtacagcaactggagtcattcaacaatttccaaataacacgtgt
agtgtatatattacatactcaagagaggaggaagctgttcgatgtatccaaaatgtacat
cagtttgtcttggagggcaaaccattaagggcatgctttggaacgacaaagtattgtcat
gcatggttgaggaatgtgccttgcaccaaccctgattgtttgtatttacatgaggttggt
tctcaagaagatagtttcacaaaagatgaaatcatttctgcatacacaaggagtagagtg
caacaaattaccggtgcttccaacaatctgcaacggcgttcagggagtgtgttgccgcca
ccaatggatgattactgcagtatcaattcttcaaatggaaaacccattgttaagaacact
ccaagtaatcctagtagtactgttagaggttctccgccaaatggaagctcagataagaca
attgctctccctgcagctgcctcatggggaactcgaggttcgaatattcaaggtccagtt
acaagtttaccaagtccaaatgggcctcccaaaaagcccgatgctgctaatagcatatta
tcatttccccctgcagttgcaggtatttcttctgctcctacagtacatagtgaagcagga
aaaagacttgcacttaatgagaattacatttctaataataccaaaggtcaacaagaatcc
ttaaaatctttgaaacctcctgttagcatggattgtcaatctttttcaacagacagacat
gattcaccagaggagctacccacttctgtatctttgagttgttctgtggttggtactcca
gccacaaaggacagtcagaaaataatggctttatcaccgagcatttctgcttctactctc
cacattgaggattcttgcagttcttgtcctgaagcaggagctacttgtgatgggctaata
caaaatatgagctctgatatgtctacagctagtatcgatagagatgatatagatgatcaa
tctgatctaaggccaaatgctttactctctgatcatgatttgattaaagcttccggggat
cacaacttacaagagcaattttctgggcagtctatagctgcttctttagattctacagat
gctgcttggaaaggcgatgatgtggttaattgcatgcctttttcaagagaagaacgtgat
tggagatcggacttccagagagaggtagtaaatgctactgagttggaagaggatgtgata
tcttttaatagtcagaggctcaaggatccagagattatgagcccttcaactcggctgcct
ggctgggcatctacatttcatgctctgaatggctctacctctcatccattgtggccagat
gctgccaatggggtggcaaccagtttggctactgatttgtcatttgttgataaacaattt
aatgataattcatctctaaactcacctagcatcccacctgtatttagcagtcagcttgag
aatggagtcaatacttctgggcaggctttgcatactttaagacatatagtgggcaatgat
ccttctaatataaatgcagattcactttttgttgataagcaattcaatgacagttcacat
ttccgctcgtctaacatttcaactgctatcaatagcaacatggagagtgtgattagctct
tctgctgctactgatatgccccatggaaattcatttttacttcacaatgaaggaagtgga
aggcacgtgggcaggtcatctggtgacatactgaatgccaatagcaatggttttgtagat
aatggtgaaaatagcataatctcaaatatattgtcaatggacttcaatatgtgggacaac
acattaacatcccagaatttggctatgcttttgggtgaaactgacaaacaatcaccaagt
tccaggaaggtgcaaagcaacaatcagtccaggttttcctttgcaaggcaggaagattct
aaaggacaagattttaggatacaaccttctcttgatatcattggacaaatgcagagaaat
cagtctttaagacgtgatttttcagaaaatggaaatgtgcatttggacaagtttcataat
agtggtggcttctattctaataattatgatggatcagtaagtcattcaagcaatcaatcc
cttaattcctcaaataaactctctgactcttttacagcagtttcgagagctcaaatctca
gctccacctggtttttctgttccaagccgggtgccacctcccggtttctcttctcatgac
agagtagatcatgtttctgattccctctctggaaatcatctgctagaagcttcttcctta
ttgagaaattcatatcaggcaaatcaaactggaaataatattagcactggtgatattgag
tttatggatcctgctattttggcagttggtaaagggaggcgtcagataggtcttaacaat
actggtctagacattaggacaccattttctccttcattaggtacttttgataatgaagca
agtcttcagttactgatgcaaagatctctgaacccccagcagagatacaccgatgtcggt
gatgggttttcccatcttggggactcctatggcatttcttcaagacttgtggaccaatca
caggttaacaatctgtctaattttgcacagatgtctctccaacattctagaaatgggctt
atgtcacatggccactgggatggttggaatgaggttcaaggtggaaacaatattggtgtg
gcagatatattgagaaatgataggcttggatataacaaatattatgctgggtatgaagac
tcgaagtttcgcatgcccagctcaagtgatctatataacagaacctttggaatgtga
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integrated database retrieval system
