Cucumis sativus (cucumber): 101221870
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Entry
101221870 CDS
T02486
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101221870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101221870
03012 Translation factors [BR:
csv03012
]
101221870
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101221870
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101221870
Translation factors [BR:
csv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101221870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
ATPase
Ank_5
AAA_19
TFIIA
AAA_22
Ank_2
AAA_23
Rad17
ABC_tran
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
101221870
NCBI-ProteinID:
XP_031740756
LinkDB
All DBs
Position
4:5145451..5163733
Genome browser
AA seq
1285 aa
AA seq
DB search
MTKKKQKKGVQKPKCKLNSNVGSAITQALQRFCLTHDEVFTFEADLSKRERALVHEVCRK
MGMTSKSSGHGDQRRVSVYKSKLQMETVKFSEKTKTVLDDLFSMYPPDDGELGKETVGNH
HKKADKPRRRKDDIFWRPSMTKEELTKKVGSYTLKNVANMKKISERSKLPIASFEDVITS
TVESHQVVLISGETGCGKTTQVPQFLLDYMWGKGETCKIVCTQPRRISAVSVSERISYER
GENVGSDIGYKIRLESKGGRHSSIVLCTNGILLRVLISEGLGKLTMEASRKSRKNVVSDL
THIIVDEVHERDRYSDFILTILRDLLPSYPHLRLILMSATIDAERFSKYFGGCPIISVPG
FTYPVKNFYLEDVLSIVKSSEENHLDDSIVGVSDGEPELTEEDKLDLDESIDMAWLNDEF
DPLLELVASGGSSQIFNYQHSVTGLTPLMVLAGKGRVSDVCMLLSFGATCELQAKDGSTA
LELAERGDQKETAEAIRKHLESSMSNSKEERRLIGAYLAKNSNSVDVRLIEQLLGKICLD
SKEGAILVFLPGWDDISKTRERLSINPLFKDASKFLIISLHSMVPSKEQKKVFRRPPPGC
RKIILSTNIAETAITIDDVVYVIDSGWMKEKSYDPYSNVSTFQSSWISKASAKQREGRAG
RCQPGICYHLYSKFRASSLPDFQVPEIKRMPIEELCLQVKLLDPNCKIEDFLQKTLDPPV
FDTIRNAILVLQDIGALSLDEKLTELGKKLGSLPVHPVTSKMLIFAILMNCLGPALTLAC
ASDYKDPFTLPMLPSERKKAAAAKAELASLYGGHSDQLAVVAAFDCWKNVKGRGQEVRFC
SKYYISSSTMTMLSGMRRQLEMELVQNGFIPEDVSTCNLNACDPGILHAVLVAGLYPMVG
RLLPPQKKGKRAVVETGSGSRVLLHPQSLNFELSLKQTDSHPLIVYDEVTRGDGGTHIRN
CTIVGPLPLLMVAKDIAVAPAKESNNRKGGTKNKNKGNGKAGIDETAQEKMDIENKSNQQ
PEEMIMSSPDNSVTVVVDRWLQFWSKALDIAQLYCLRERLSSAILFKVKHPNGVLPPVLG
ASMHALACILSYDGLSGISLESVEMLTSMVNATEIGHFAPGRSIGTHKKVSWFHKLHPNY
NDFTVPEANGTSILNDPLSQNLLPTPDFRTANPSDPSSPYVRTSPNSVYARSTPQSQREH
KPFKLGKLSRDQDAAQQQQQQQQQQQHVQEHNTRKQRKSHKERMAAKQQKPPSGDLSLNG
YGLNTYGPYGPRGISLKRPRGNGVG
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaagaagcagaagaagggggtgcaaaagcctaaatgtaaactaaattcaaac
gtgggttctgcaattacgcaagctctccaacggttttgcctgacccatgacgaagttttc
acttttgaagctgatctttcgaagcgtgaacgtgctcttgtgcatgaagtgtgcaggaaa
atgggtatgacatcgaagagttctgggcatggagaccaacgacgtgtgtctgtatataaa
tccaaactgcaaatggagacagtgaaattttctgaaaaaaccaaaactgttttggacgac
ttgtttagtatgtatcctcctgatgatggagagttgggcaaggagacagttgggaaccac
cataaaaaggctgataagccaaggcgtaggaaagatgacattttctggaggccgtcaatg
accaaggaagagctaacgaagaaagtgggatcatatactttgaagaatgttgctaatatg
aaaaagatctcagagagatctaagcttccaattgcttcatttgaagatgttattacttca
acagttgaatctcaccaggttgttctcatatctggtgagactgggtgtggaaagacaacg
caggtccctcagtttcttctggattatatgtggggtaagggagagacgtgtaagatagtt
tgtacccaacctcgacgaatatctgctgtatcagtttctgagcgaatctcctatgaaaga
ggagaaaatgttggaagtgatattggatacaagatacgactggaaagtaaaggtggtaga
cactcatcaatcgtactctgtacgaatggtattctcttaagggtgctgatttcagagggg
ttgggcaaattaacaatggaagcctccagaaagagtaggaaaaatgttgtgtctgactta
actcacattattgtggatgaagttcatgaaagggaccgttactctgacttcattctaaca
attttgagagacttgcttccatcatatcctcatttaaggctgatactcatgagtgctaca
attgatgctgaacggttttcaaaatattttggaggctgtccaatcatcagcgttcctgga
ttcacctatcctgtaaaaaatttctatctggaggatgtactttctatagtgaaatcttcg
gaagagaaccaccttgatgatagtatagtgggtgtttcagatggggaacctgagctaact
gaagaagacaagcttgatttggatgaatcgattgacatggcttggttgaatgacgaattt
gatccccttttggaattggttgcttctggtggatcctctcaaattttcaattatcagcat
tccgtgactgggctaacacctctaatggttcttgctggaaagggtagagtttccgatgtt
tgcatgctgctttcttttggtgctacgtgtgaattacaggccaaggatggctcaactgca
ttggaattggctgaacgaggagatcagaaagaaactgctgaagcaatcagaaaacatctg
gaaagttccatgtccaactccaaggaagaacgtcggttgattggtgcatatcttgcaaaa
aattctaattctgttgatgttcgtcttatagagcagttgttaggaaaaatatgtcttgat
tcaaaagaaggagctattcttgttttccttcctgggtgggatgacattagcaagactcga
gaaagattatcaatcaatcctcttttcaaagatgcatcaaaatttctgataatctctctt
cattcaatggttccttctaaagagcaaaagaaggtattcagacgacctcctcctggttgt
cgcaaaattattctgtccactaatattgctgaaacggccattacaattgatgatgtggtt
tatgttatagacagtggatggatgaaagaaaaaagttatgatccttacagtaatgtttct
acttttcaatcatcttggatatcaaaggctagtgccaagcagcgtgagggtcgtgcaggt
cgctgtcagcctgggatatgctatcacctttattcaaagttccgtgcatcgtctcttcct
gattttcaagttcctgaaattaagagaatgccaatagaggaactctgtttgcaggtgaaa
ttgcttgatcccaattgtaaaatagaggatttcttgcagaagactttggatcctccagtt
tttgatactatccgtaatgcaatcttagtccttcaggatattggggctttgtcactagat
gagaaactgactgagctggggaagaaattaggttcattgcctgtccatccagtaacaagc
aagatgcttatcttcgccatactgatgaactgccttggtcctgctctaactctggcttgt
gcttcggactacaaggaccctttcactcttccaatgttaccaagtgaacgaaagaaagct
gctgctgctaaagctgagcttgcttctttgtatggtgggcatagtgatcaactggccgtt
gtagctgcatttgattgctggaaaaatgttaaaggaaggggtcaagaggtacgtttctgt
tctaaatactacatctcttcgagcactatgactatgttatctggcatgcggagacaactt
gagatggaactagttcaaaatggttttatacctgaggatgtttcaacttgcaacttgaat
gcttgtgaccctggcatactccacgctgtccttgtagctggtttatatccaatggtggga
agattacttccaccccagaaaaagggaaagcgggctgtagttgaaactggttcagggagc
agagttcttttacacccacaatcccttaactttgaactatcactcaagcaaacggatagt
catcctctaattgtttacgatgaggtaacccgaggggacggtggtacacacattagaaac
tgcactattgttgggcctctcccattattaatggttgcaaaggacattgctgttgcccct
gctaaggagagtaataatcgtaaaggtggtaccaaaaataagaataaaggcaatggtaaa
gctggtatagatgaaactgctcaagagaaaatggatatagaaaataaatcaaatcaacag
ccagaagagatgattatgtcctccccagataactcagtaactgtggttgttgaccgttgg
ctgcagttttggtcaaaggcacttgatattgctcagttatactgcttgagagagcgatta
tcttcagcaatcttattcaaagtaaagcatccaaatggagttcttcctcctgttcttggt
gcctctatgcatgccttggcttgcattttatcttatgatggcttatctggtatttcatta
gaatcagtagaaatgttgacgtcgatggtaaatgcgactgaaattggccattttgcacct
gggaggtccataggaacacataagaaagtaagttggtttcataaattgcatccaaattat
aacgattttactgttcccgaagctaatggaacatcaattttgaatgatccattaagtcag
aatcttttaccaacacctgattttagaacagcaaacccaagtgacccatcaagcccttat
gttaggacttcacccaattcagtctatgcaaggtcaacaccacagtcacagagagagcat
aagcctttcaagctgggaaaactctctcgagaccaagatgctgcgcagcagcagcagcag
cagcagcagcagcagcagcacgttcaagagcacaacacacgtaaacaaagaaagtcccac
aaggagcgcatggcagctaaacaacagaagcctccatcaggagacctcagtttaaatggg
tatgggttaaatacatatggaccatacggccctcggggtatctctctaaagcggcctcgt
ggtaatggtgtgggttaa
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integrated database retrieval system
