Cucumis sativus (cucumber): 101221902
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Entry
101221902 CDS
T02486
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101221902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101221902
03019 Messenger RNA biogenesis [BR:
csv03019
]
101221902
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101221902
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101221902
U7-dependent histone pre-mRNA processing factors
101221902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Beta_lactamase3
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
101221902
NCBI-ProteinID:
XP_011655552
LinkDB
All DBs
Position
5:complement(24748218..24752040)
Genome browser
AA seq
693 aa
AA seq
DB search
MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS
DFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHS
TISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTLS
MNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKN
SCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYISFSAHADFAQTSAFLEELM
PPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEK
TPDVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQRITIPYSNAFNVIVRRLKQV
YESVESSTDDESGVPMIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINRE
VPKVIVESEAVKTEEENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSG
EVESDNEALKERVKTAFQRIQCAVNPIPLSSSS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggttggacagccaccctcccttaagaaacgggatgcatcctcgaccagagag
gaggatcagcttattataactcctcttggggctggcaatgaagtgggtcgttcctgtgta
tatatgtcttacaaaagcaaaattgttttgtttgattgtggaattcaccctgcttactct
ggtatggctgctttgccttactttgatgagattgacccttcaacgattgatgtcctgctc
attacccactttcatttggaccatgctgcatcactcccttatttcttggagaagactaca
ttcaaaggacgagtctttatgacttatgctactaaagcgatctacaagttgttgctctcg
gactttgtgaaagtgagcaaagtttcagttgaagatatgttgtatgatgagcaggacata
aatcgttccatggacaagattgaggtcattgatttccatcaaacggtagaagttaatggt
attcggttttggtgttacactgctggtcatgtgcttggtgctgccatgtttatggtggat
atcgctggtgtccgagttctctacactggagactactcacgtgaagaagatcggcatctt
cgggctgccgagatgcctcagttttctcctgatgtttgcataattgaatccacatatggt
gtccagctccatcaacctcgacatattcgagagaagcgttttaccgatgttgttcattca
accatttctcaaggtggtcgcgtactgattccagcttttgcccttggacgtgcccaggag
ctcctccttattcttgatgaatattgggcaaaccatcctgagctccataatattcccata
tactatgcttctcctctggcaaaaagatgtttgactgtatatgagacatatacgctctcc
atgaatgataggatccaaaatgccaaatcaaaccccttccgattcaagtacatatcccca
ctaaagagcattgaagttttcaaggatgttggcccatcagtggtgatggccagccctggt
ggacttcaaagcggtttgtcgcgtcagctctttgacatgtggtgttctgacaagaaaaat
tcatgtgtgcttcctggttatgtcgttgaagggacactggctaagactataatcaatgag
ccaaaggaagtcaccctcatgagtggactcatggctcctctcaacatgcaggttcattac
atttctttctctgcccatgctgactttgcgcagacgagcgcattcttggaagagctcatg
ccacccaacataattctcgtccatggagaagctaatgagatggggaggctgaaacagaag
cttatgtcccaatttgctgatcggaatacaaagattctcactccgaagaattgtcagtct
gttgagatgtatttcaactctcagaaaatggcaaaaactattggaaaattggctgagaag
actccagacgttggcgaaactgtcagcggtttactagtgaagaaaggatttgcatatcaa
ataatggcaccagaggatctacacattttctctcagctatcaactgcaaacatcaaccaa
cgcattacaattccatactccaacgcctttaatgtgatcgtacgtaggctcaaacaggta
tatgagagtgtagaatcttcaaccgatgatgaatccggcgttccaatgattcgtgtgcat
gatcgagtaaccgtgaagcaggaatcagagaaacatgtctcacttcactggacatccgac
cctttaagcgacatggtatcagattccgtggtagcactcattctcaacatcaaccgcgag
gttccgaaggtcatagtggagtctgaggctgtaaaaacagaagaagagaacgtgaagaaa
gcagagaaggtaattcatgccctgcttgtttcactgttcggcgatgtgaagttaggagag
aatgggaagctggtgattaacgtagatgggaatatagcagaggttgataaacaaagtggt
gaagtagaaagtgataatgaagctctcaaggaaagagttaaaacagcatttcaaagaatt
caatgcgctgtgaacccaattcctctttcatcatcatcttag
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