Cucumis sativus (cucumber): 101222141
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Entry
101222141 CDS
T02486
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101222141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
101222141
03019 Messenger RNA biogenesis [BR:
csv03019
]
101222141
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101222141
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101222141
U7-dependent histone pre-mRNA processing factors
101222141
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
101222141
NCBI-ProteinID:
XP_011655548
LinkDB
All DBs
Position
5
Genome browser
AA seq
693 aa
AA seq
DB search
MASLGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLL
DFVKVSKVSVEDMLYDEQDISRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHS
TISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTLS
MNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPSGLQSGLSRQLFEMWCSDKKN
SCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYISFSAHADFAQTSAFLEELM
PPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEK
TPDVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQRITIPYSNAFNVIVRRLKQV
YESVESSTDDESGVPMIRVHDRVTVKQESEKHVSLHWTSDPLSDMVSDSVVALILNINRE
VPKVIVESEAVKTEEENVKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAEVDKQSG
EVESENEALKERVKTAFQRIQCAVNPIPLSSSS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcttggacagccgccatcacttaagaaacgggatgcatcctcgaccagagag
gaggatcagcttattataactcctcttggggctggcaatgaagtgggtcgttcctgtgta
tatatgtcttacaaaggcaaaattgttttgtttgattgtggaattcaccctgcttactct
ggcatggctgctttgccttactttgatgagattgacccctcaacgattgatgtcctgctc
attacccactttcatttggaccatgctgcatctctcccttatttcttggagaagactaca
ttcaaaggacgagtctttatgacttatgctactaaagcgatctacaagttgttgctctta
gactttgtgaaagtgagcaaagtttcggttgaagatatgttgtacgatgagcaggacata
agtcgttccatggacaagattgaggtcattgatttccaccaaacagtagaagttaatggt
attcggttttggtgttacactgctggtcatgtgcttggtgctgccatgtttatggtggat
attgctggtgtccgagttctctacactggagactattcacgtgaagaagatcggcatctt
cgggctgccgagatgcctcagttttctcctgatgtttgcataattgaatccacatatggt
gtccagctccatcaacctcgacatattcgagagaagcgttttaccgatgttgttcattca
accatttctcaaggtggtcgtgtactgattccagcttttgcccttggacgtgcccaggag
ctcctccttattcttgatgaatattgggcaaaccatcctgagctccataatattcccata
tactatgcttctcctctggcaaaaagatgtttgactgtttatgagacatatacgctctcc
atgaatgataggatccaaaatgccaaatcaaaccccttcagattcaagtacatatcccca
ctaaagagcattgaagttttcaaggatgttggcccatcagtggtgatggccagccctagt
ggacttcaaagcggtttgtcacgacagctctttgaaatgtggtgttctgataagaaaaat
tcatgtgtgcttcctggttatgtcgttgaaggtacactagctaagactataatcaatgag
ccaaaggaagtcaccctcatgagtggactcatggctcctctcaacatgcaggttcattac
atttctttctctgcccatgctgactttgcgcagacgagtgcattcttggaagagctcatg
ccacccaacataattctcgtccatggagaagctaatgagatggggaggctgaaacagaag
cttatgtcccaatttgctgatcggaatacaaagattctcactccgaagaattgtcagtct
gttgagatgtatttcaactcccagaaaatggcaaaaactattggaaaattggctgagaag
actccagacgttggcgaaactgtcagcggtttactagtgaagaaaggatttgcatatcaa
ataatggcaccagaggatctacacattttctctcagctatcaactgcaaacatcaaccag
cgcattacaattccatactccaacgcctttaatgtgatcgtacgtaggctcaaacaggta
tatgagagtgtagaatcttcaacagatgatgaatccggcgttccaatgattcgtgtgcat
gaccgagtaaccgtgaagcaggaatcagagaaacatgtctcacttcactggacatccgac
cctttaagcgacatggtatcagattccgtggtagcactcattctcaacatcaaccgcgag
gttccgaaagtcatagtggagtcggaggctgtaaaaacagaagaagagaacgtgaagaaa
gcagagaaggtaattcatgccctgcttgtttcactgttcggcgatgtgaagttaggagag
aatgggaagctggtgattaacgtagatgggaatatagcagaggttgataaacaaagtggt
gaagtagaaagtgaaaatgaagctctcaaggaaagagttaaaacagcatttcaaagaatt
caatgcgctgtgaacccaattcctctttcatcatcatcttag
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