Cucumis sativus (cucumber): 101222195
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Entry
101222195 CDS
T02486
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
csv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101222195
03015 mRNA surveillance pathway
101222195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101222195
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101222195
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101222195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
101222195
NCBI-ProteinID:
XP_004150128
LinkDB
All DBs
Position
5:14680053..14688196
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AA seq
508 aa
AA seq
DB search
MADHAAPDSTTSLSAAAAATTADSSSAPPIVITPVPKRAWGDEEDDDVVESGDSSSAPSE
YLESLKIQDDTNLEEPIDSNITAVTTGDTPYSSASTFEDLNLSKELLKGLYVEMKFHKPS
KIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAM
QNIEVLKKMGKYTGITSECAVPADSANYIPMSKRPPITAQVVIGTPGTIKKWMSSRKLGV
SCVKILVFDEADHMLGEDGFQDDSLRIMRDIERSSPHCQVLLFSATFDENVKNFVSRVVK
DYNQLFVKKEELSLESVKQYKLICPDELTKIRVIKDRIFELADKLGQTIIFVRTRNSAGM
LHKALVDLGYEVTTIQGALTTEIRDKIIKEFKDGLTKVLISTDLLARGFDQQQVNLVINY
DLPLKYEPSPQATKYRSSSLSEPNYEVYLHRIGRAGRFGRKGAVFNLLCGDEEIMLMDKI
QNHFRSEIIEVRDSEDDIQTALKAAGLV
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcacgcggctccagactctaccaccagcctgtcggccgctgctgctgccacc
accgccgactcgagttctgccccacctatagttatcacaccagtacccaaacgagcttgg
ggtgatgaagaagacgatgatgtggttgaatctggagactcatcctctgcgccttccgag
tacttggaatcccttaaaatccaagacgatacaaatcttgaagaaccgatcgactctaac
atcacagcagtgacaactggtgatactccatattcatccgctagtacttttgaggatttg
aatctgtctaaagagttgttaaagggtttgtatgttgagatgaaattccataagccaagt
aaaatccaagctataagtttacctatgatcttgactcctccttacaaagatttaattgct
caagcacacaatggttctggaaagactacttgttttgtgcttgggatgttgagtcgcgtt
gatgtcaacttgaaggctcctcaggcgttttgcatatgtcctacaagggagttagccatg
cagaatattgaggttctcaagaagatgggaaagtacactgggataacttctgagtgtgct
gttcctgctgacagtgctaactatatacctatgtcaaagcgaccaccgataactgcacaa
gttgtgatcggaactcctggcacaataaagaaatggatgtcatcgaggaagttgggagta
agttgtgtgaagattcttgtttttgatgaggctgatcatatgcttggcgaggatggcttt
caggatgattcattgagaatcatgagggacattgagaggagtagccctcattgccaggtg
cttctgttctctgctacattcgatgagaatgttaagaactttgtctctagggttgttaaa
gactacaaccaactttttgtaaagaaggaagaactatctttggagagtgtgaagcaatac
aagttgatatgtccggatgaattaactaaaattcgagtcataaaagatagaatttttgaa
cttgcagacaaattgggtcagacaattatatttgtgcgaacaagaaacagtgctggcatg
ttacataaggcactagttgatcttggttatgaggtgactaccattcaaggggcattgaca
actgaaattagagacaaaataataaaagagttcaaggatggtttgaccaaagttcttatt
tcgactgaccttctagctcgaggctttgatcagcagcaggtcaatctagttatcaattac
gatcttcctcttaaatatgaaccttctccacaagcgacaaaatatagatcttcctcgtta
tctgagcctaactatgaggtgtaccttcatagaattggtcgggcaggtcgttttgggcgc
aagggagctgtgtttaacttgctgtgtggcgatgaggaaatcatgctaatggacaaaatt
cagaaccattttcgctctgaaataatagaggttcgagactctgaagacgacattcagaca
gccttaaaagctgccggattggtttga
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