Cucumis sativus (cucumber): 101222268
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Entry
101222268 CDS
T02486
Name
(RefSeq) uncharacterized protein LOC101222268
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101222268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101222268
03400 DNA repair and recombination proteins [BR:
csv03400
]
101222268
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
101222268
Messenger RNA biogenesis [BR:
csv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
101222268
DNA repair and recombination proteins [BR:
csv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
101222268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101222268
NCBI-ProteinID:
XP_011653461
LinkDB
All DBs
Position
4:complement(9395944..9412657)
Genome browser
AA seq
803 aa
AA seq
DB search
MEAILKRYFGFSALRPYQKEVIQSILRGKDCLVVTGTGSGKSLCYQVPPLVVGKTGIVVS
PLVSLMQDQVMALKQRGIKSEYLGSTQADSTVQANAESGQYSILFMTPEKACSLPMSFWS
KLKKAGICLFAVDEAHCISDWGHNFRAEYELLDNFRDILPGLPFVALTATASEKVRNDII
NSLKMKDPQVTIGSFDRTNLFYGVKFFNHRRLLMNELVLDISKYVGSGGSTIIYCRTIKD
VEQISKSLKEAGISAGIYHAQMVKESRAESHRLFVRDELQVMVATVAFGMGIDKPNIRLV
IHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKAELYCGDSPTENERTAIMESL
MAAQQYCSIATCRRNFLLGYLGEKSQSEKCGNCDNCIDSKKEHDVSKEAFLLLACIQSCW
GTWGLNMPVDILRGSTEKKIRYAQFDKLPLYGLGREYSSKWWKALASQLIYNGYLTENIC
DFYRTIGISAKGENFLNSTRQDCQPPLVLPVMSEMIGENEDDSALSEAGKMDNLATLKSG
LSEAEEKLFQLLLEERMKIARSVRTVPYAICGDQTIKRIALIRPSTKARLANIDGVNRHL
LTMHGDLILEAVKRLSQQVSQSLDGEYRKPNRRRRPLSPARFKTWKMWHEDGLSIQKIAN
FPGRSAPIRETSVFQYIIDAVQKGYEIDWTKFCDEIGFTGQIFSDIQSAVTKVGSAKKLK
AIKNEVPEISYAHIKTFLAMQRCGISSKGLDKRIDKPMTGASSLCWNQWYVTIRTKLHCF
MNEHVFSKITNLKKRRDYSNDRK
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggaggccattctaaagaggtactttggattctcggcgcttaggccgtatcagaaagaa
gtcattcagagcattcttcgtgggaaggattgcttggtggttacgggcaccggaagtggg
aaatccttatgttatcaggtaccgcctttggtcgttggaaagactggaatagttgttagc
ccccttgtatcattaatgcaggatcaggtaatggctttaaaacaaagagggatcaagtct
gagtaccttggaagtactcaggctgattccacagttcaagccaatgcagagagtggtcaa
tatagtatattgttcatgacaccagaaaaggcatgctctcttcccatgagtttttggtca
aaattaaagaaggcaggaatttgtttgtttgccgttgatgaagcacactgcatttcagat
tgggggcataactttagggctgaatacgaactgctggacaactttcgtgatattctacca
ggtcttccatttgttgcactgactgccactgcatctgaaaaggttcggaatgacattatt
aattctttgaagatgaaagacccacaagttaccattggttcatttgatcgaacaaatctt
ttttatggagtcaagttttttaatcatcgtcgattattgatgaatgagctggtgcttgat
atctctaagtatgtaggctctggtggttcaactatcatttactgcaggacaattaaagat
gttgagcagatatccaagtcacttaaagaagcagggattagtgctggaatttatcacgct
caaatggtcaaagaatcacgtgcagaatcccacagactatttgtaagggatgaactgcaa
gtcatggttgccactgtggcttttggtatgggcattgacaaaccaaacataagactggtg
atacattatggctgcccaaagagtctagaatcttattatcaggaaagtgggcgatgtggt
agagatggtattgcttctgtttgctggctttattacacgagaagtgattttgctaaagca
gagctctactgtggtgattcaccaactgaaaacgaaagaacagctattatggagtcgttg
atggctgcacagcagtattgctctatagcaacttgcagaagaaacttcttgctcggttat
cttggggaaaaatctcagtctgaaaaatgtggaaattgtgataactgcatagactcaaaa
aaggagcatgacgtgtcaaaagaagcatttcttctactggcctgcatccaatcatgctgg
ggtacatggggactgaacatgcctgtggatattcttcgtggatctacagaaaaaaagata
cgctatgctcagtttgataagcttccactttatggacttggaagagagtactcatcaaaa
tggtggaaagcactagctagtcaactaatttataatggctatttgacagagaacatatgc
gatttctacagaaccataggtatcagtgcaaaaggggaaaattttctcaattctaccaga
caggactgccaaccacctctagttttgccagtgatgagtgaaatgattggtgaaaatgaa
gatgacagtgcactcagtgaagctgggaaaatggataatttagccactttgaagagtgga
ctttcagaggctgaggaaaaactctttcaattacttttagaagagagaatgaagattgct
agaagtgttcgaactgtcccgtatgccatatgtggtgatcaaacaattaaaagaattgca
ttgattagaccatctaccaaggcaagattagcaaatattgatggtgtcaaccggcatctg
ctaacaatgcacggagatctaattcttgaagcagtcaagcgtctatcacaacaagttagt
caatcactggatggagaatatagaaagccaaatcgacgacgacgaccgttgtctccagca
aggttcaaaacttggaaaatgtggcatgaagatggtctctcaatacagaaaattgctaac
ttccctggtagatcagcacctatcagagaaacttctgtttttcagtatattattgatgca
gtccagaaaggatatgaaatcgactggaccaaattttgtgatgagataggatttacaggt
cagatattctccgacattcaatctgctgtcacaaaggttggatctgctaagaagttgaag
gcgataaaaaatgaagtaccagaaataagttatgcacacatcaaaacttttctggcaatg
caacgctgtggaatatcctctaaaggcctcgataaaagaatcgacaaaccaatgactggt
gcgtcatcgctttgttggaatcaatggtatgtgacgattcgtacaaagttgcattgtttc
atgaacgaacatgtcttttctaaaataaccaatttgaagaagagacgtgactattcgaat
gatcgcaaatag
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