Cucumis sativus (cucumber): 101222342
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Entry
101222342 CDS
T02486
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101222342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csv03041
]
101222342
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101222342
Spliceosome [BR:
csv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101222342
Complex C
U5 SnRNP specific factors
101222342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
ATP-cone
Motif
Other DBs
NCBI-GeneID:
101222342
NCBI-ProteinID:
XP_004147618
UniProt:
A0A0A0L839
LinkDB
All DBs
Position
3:complement(11422916..11431438)
Genome browser
AA seq
2175 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAY
RGRPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETR
AAYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDSFKNPDKKKEIEKLLNPIPNNVFD
QLVSIGRLITDYQDGNDATGPATANGDGALDDDIGVAVEFEENEEEEESDLDMVQEDEED
EDDVAEPNGSGAMQMDGGIDDDDLQENDGGMNLNVQDIDAYWLQRKISQAYEQQIDPQQC
QKLAEEVLKILAEGDDREIETKLLVHLQFEKFSLVKFLLRNRLKVVWCTRLARSEDQEER
KKIEEEMMHLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDAERGRRD
PVERDMDNGGLTGQSQLLDLDSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKLN
AKPFGSDEKFVKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKTN
VAVLTILQQIALHTNPDGSYNHNDYKIVYVAPMKALVAEVVGNLSNRLQDYGVKVRELSG
DQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYIG
ITVKKPLQRFQLMNDLCYEKVMSFAGKHQVLIFVHSRKETSKTARAIRDAALANDTLSRF
LKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLVS
TATLAWGVNLPAHCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIIIT
GHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRMLR
NPTLYGLAADAPTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKES
LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKA
LNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDLAWERYYDLSSQELGELIRAPKMG
RTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVESFWVLVEDNDGE
FIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPVSFRHLIL
PEKFPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAPT
GSGKTICAEFAILRNYQKGQDNVLRAVYIAPIESLAKERYRDWDKKFGKGLGIRVVELTG
ETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVI
VSRMRYIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQGV
DIANFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEKLP
FLLRSLEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVCVISS
SMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLMQMMGHASRPLLDNSGKCVILCHA
PRKEYYKKFLYEAFPVESHLHHFLHDNINAEIVAGIIENKQDAVDYITWTLMYRRLTQNP
NYYNLQGVSHRHLSDHLSELVEHTLSDLEASKCISIEDDMDLSPSNLGMIASYYYISYTT
IERFSSSLTAKTKMKGLLEILASASEYALLPIRPGEEELIRRLINHQRFSFENPKCTDPH
VKANALLQAYFSRQSVGGNLALDQREVVISASRLLQAMVDVISSNGWLSLALLAMEVSQM
VTQGLWERDSMLLQLPHFTKELAKRCQENSGKNIETIFDLVEMEDNERHELLQMSDSQLL
DIARFCNRFPNIDMAYEVLDGENVAAGENVTLQVTLERDLDGRTEVGPVDALRYPKAKEE
GWWLVVGDTKSNQLLAIKRVSLQRKAKVKLDFTAPADTGKKSYTLYFMCDSYLGCDQEYS
FTVDVKDAAAFDEDE
NT seq
6528 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatctgggtggtggtgccgaagcacacgctcgctttaagcaatacgagtaccga
gccaactccagtttggttctcaccaccgactctcgccctcgcgacacccatgaacccaca
ggcgagcccgagtctctttatggaaaaatcgatcccaaaagctttggcgacagggcttat
agaggtagacctccggaattggatgagaaactcaagaaatccaagaggaagaagaaagag
ctcgaccccattgcggagccgcagcccagtaggcaaggcaagcgccgtcgacttcaggaa
gaaagtgttcttacttctactgaagaaggtgtttacatgcccaagactaaggagactagg
gctgcttatgaggctatgcttagtgtcattcaacagcaattgggtgggcaaccgttgagt
atagtgagtggtgcggcggatgagattttggcggttttgaaaaatgattcgttcaagaac
ccggacaagaaaaaggaaattgagaaattattgaatcctattccaaacaatgtattcgat
cagttggtatccattgggaggcttattacggattatcaagatgggaatgatgctactggg
cctgccactgctaatggggacggtgctcttgatgatgatataggtgttgctgttgaattc
gaggagaatgaggaggaggaagagagcgatcttgacatggttcaggaggatgaagaagat
gaggatgatgtggcagagcctaatggttctggggctatgcagatggatgggggaattgat
gacgatgatttgcaggaaaatgatggaggtatgaacctgaatgttcaggatattgatgct
tactggctccagaggaaaatctctcaggcttacgagcaacaaattgatccacagcaatgt
cagaagcttgcagaagaggtactgaagatactggctgaaggtgacgaccgagaaattgag
actaagttgttggtgcacctccagtttgaaaaattcagccttgtaaaatttcttctacgg
aatcggttgaaggttgtatggtgcacccgtttggctagatctgaagaccaagaagagaga
aaaaaaatcgaggaggaaatgatgcatctgggtccagatttagctgcaattcttgagcag
ctgcatgctactagagcgacagcaaaagaacgacaaaagaatttagagaagagtattaga
gaagaggctcgtcgattgaaggatgagagcggaggggatgcggaaaggggaaggagggac
cccgttgagagagatatggacaacggggggttgactggacagagccaattgcttgatctc
gacagtattgcatttcaacaaggtagtcttttgatggcaaacaacaagtgtgtacttcct
gatggatcatacagacatctgggtaagggttatgaagagattcatgtacctaaactgaat
gcgaagccttttggtagcgatgagaaatttgttaaaattgcttccatgccagattgggca
caaccagcttttaagggaatgactcagttaaatagggtgcagagtaaagtctacgagact
gccctttttaaagccgacaatgttcttttgtgtgctcccactggtgccggaaaaaccaac
gttgcagtccttactatactacagcagattgctctacacacaaatccagatggttcgtac
aaccacaatgattataagattgtatatgttgcacctatgaaagcccttgttgctgaagtt
gttggcaatctatctaatcgcttgcaggactatggtgtcaaagtacgggaacttagtgga
gatcaaacattgactcgtcaacagattgatgagactcaaattattgtgacaactccagag
aagtgggatatcattactaggaagtcaggtgaccgcacatacacacaacttgtaaagctt
ttgattattgatgagattcatcttcttcatgataacagaggtcccgttcttgaaagcatt
gttgccagaactgtgaggcaaattgagaccactaaggagcatatccgcctggtgggatta
tcagccacactccctaattatgaagacgtagcattatttttgcgagttgatccaaagaaa
ggtctgttccattttgacaatagctatagaccagtcgcactctatcaacagtacattgga
ataacggtgaagaagccattgcagaggttccaattgatgaacgatctctgttatgagaag
gtgatgtcgtttgcaggaaagcatcaggttcttatctttgtccattcaaggaaagaaaca
tccaaaacagctcgtgctatacgagatgctgctcttgccaatgatacacttagcagattc
ttgaaggaggacagtgctagccgtgagattcttcacactcatactgatttagttaaaagt
aatgagctcaaagaccttctaccctatggttttgcaattcatcatgctgggatgacaagg
gttgatcgccaacttgttgaggatctttttgctgatggtcatattcaagttttggtttca
acggctactcttgcttggggtgtgaatctgccagctcattgtgttattatcaagggaact
caaatttacaatccagagaaaggagcatggactgagttgagtcctctagatgttatgcag
atgctgggtcgtgcaggaagaccacaatttgattctgagggaacgggaataatcatcacg
ggacatagtgagttacagtattatctttcactaatgaaccaacagctaccaattgaaagt
cagtttgtgtccaaattggccgatcaattaaatgcagaaattgttcttggaacggttcaa
aatgcaagagaagcgtctaattggctgggatatacttacttgtatgttcgtatgctaagg
aatcccaccctctatggactagcagctgatgctcctacaagggatataacattggaagag
aggagagctgatttgattcattcagctgctacaattttagataaaaataatcttgtgaag
tatgatcggaaaagtgggtatttccaagttacggacttgggtcgcattgctagctactac
tatataacacatggaacaatatccacttacaatgagcatttgaagccaatgatgggggat
attgaactatgtcgtttgttctcattgagtgaagaatttaaatatgtaacggtgcgacaa
gatgaaaaaatggaattagcaaagctgctggaacgtgttccaattcctatcaaggaaagc
ttggaggaacccagtgccaagatcaatgttttgctgcaagcgtatatatctcagttaaaa
ttggaagggctgtcactgacatctgacatggtgttcataactcagagtgctgggcggctt
atgcgggctctttttgagattgttctgaaacgaggatgggcacaacttgctgagaaggcc
ttgaacttgtgcaagatggtgagtaaaagaatgtggagtgtccagacacctctccggcaa
ttccatggtatctccaatgatattcttatgaagcttgagaagaaggatttggcttgggaa
cggtattatgatctctcatcgcaggagctaggtgagcttatacgtgccccaaaaatgggt
agaactctacataagttcatccatcaattccctaaattaaatctggcggcacatgttcag
ccaattacacgtacagttctgagagttgagcttacaataacaccagacttccagtgggag
gacaaggttcatggatatgtagagtcgttctgggtacttgtggaggataatgatggtgaa
tttatacatcatcatgagcatttcttgttgaagaagcagtacattgatgaggatcacact
ttgaatttcacggtgccaatatgtgaaccactacccccacagtatttcatacgtgttgtg
tcagatagatggctagggtcacaaactattttgccggtctcttttaggcacctcattctg
ccagaaaagttccccccaccaacggagttgttagacttgcaacctcttcctgtgactgca
ttaagaaatccatcttatgaagctctttatcaagatttcaagcatttcaatcctgttcag
actcaagtctttaccgtactgtataacacagacgacaatgttctagttgctgcaccaact
ggaagtggaaaaactatatgtgcagagtttgctatattaaggaattatcagaaaggacag
gataacgtattacgtgctgtgtacattgcccctatcgaatctcttgccaaagaacgttac
agggattgggataagaagtttggaaagggacttggaatccgtgttgttgagttaacaggg
gaaacggctacagatttgaagcttctcgagagaggtcaaataatcattagtacccctgaa
aaatgggatgctttatctcgtcgttggaaacaacgaaagtatgttcaacaggtcagtctt
tttattattgatgaacttcacttgattgggggtcaaggtggtcctgtattggaggtgatt
gtgtcgaggatgagatatattgctagtcagattgagaacaagattcgaattgtggctctt
tctacttctcttgcaaatgcaaaagatattggggattggataggggctacttctcatggt
ctcttcaattttccgcctggtgttcgccctgttcctttggagattcatattcagggggtg
gatatagctaattttgaagccagaatgcaggcaatgacgaaaccaacatacactgctatt
gttcagcatgcaaagaatggaaagcctgctattgtctttgttcccacgagaaagcacgtc
agactgacagcggtggatataatgacgtactcaagtgcagataatggagagaaattgcca
tttttgttgagatctcttgaagacattgagccttttgttgacaagatcaacgatgagatg
ctgaaagccattttacgtcatggagttggctatttgcatgagggattgtctagcttggat
caagaagttgtgacgcaactgtttgaagcaggttggattcaagtttgtgttataagcagc
tcgatgtgttggggtgttccattgtcagcccatttggtagtagtaatgggaacacagtat
tatgatggaagagaaaatgctcacaccgattatcctgttactgatttgatgcagatgatg
ggccatgctagtcgaccactacttgataattctgggaaatgtgtgattctctgccatgca
ccccgtaaagaatactacaagaaattcttatatgaagctttccctgttgaaagccaccta
caccattttctccatgataatataaatgcagaaattgttgctggaattattgagaacaag
caagatgctgttgattatattacgtggactcttatgtacagaaggcttactcagaatccc
aattattataatcttcaaggtgtcagtcataggcatctttctgaccacctttctgagctt
gttgagcacacgttgagtgacttagaagcaagcaagtgcatcagcattgaggatgacatg
gacttgtctccatctaatcttggtatgatagcatcgtattattacattagttacactact
attgagcgtttcagttcttctttaactgctaaaaccaagatgaagggtcttttggagatt
ctggcttcagcttctgagtatgcattgcttccaatacgaccgggtgaagaagagttgatt
cgtagattgattaatcatcagcgattttcattcgaaaatccgaaatgcacagacccacat
gtcaaagcaaatgctttgctgcaggcttatttctcaaggcaatctgttggtggtaacttg
gcattggatcaacgagaggtagtcatttcagccagtaggttgctacaggcaatggtggat
gtcatttcaagcaatggttggctgagccttgcccttctcgcaatggaagtcagtcaaatg
gtaacccaaggcttgtgggagcgggattccatgcttcttcagctaccacatttcacaaag
gagctagccaagagatgccaagagaactctggaaagaacatagagacaatatttgacctg
gtggaaatggaggataacgaaaggcatgaactacttcagatgtccgattcgcagttgctg
gacattgcacgcttttgcaatcggtttccaaatattgatatggcatatgaggtactagat
ggtgagaatgttgcagcaggagagaacgtaacactgcaggttacacttgagcgggatctt
gatgggaggaccgaggttgggcctgtggatgctttaaggtatcctaaagccaaagaagaa
ggctggtggcttgttgtcggcgacacaaagagtaaccagctactagcgattaaaagagtt
tctcttcaaaggaaggcaaaggtcaagcttgatttcactgcacctgcagataccggaaag
aaatcgtacaccctttatttcatgtgtgattcgtacttgggctgcgaccaggaatatagt
ttcacagtggatgttaaagatgcagctgcatttgatgaagacgagtag
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integrated database retrieval system
