Cucumis sativus (cucumber): 101222446
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Entry
101222446 CDS
T02486
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101222446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101222446
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101222446
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101222446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
101222446
NCBI-ProteinID:
XP_011650636
LinkDB
All DBs
Position
3:complement(6592699..6619213)
Genome browser
AA seq
2390 aa
AA seq
DB search
MLMFSTATSSQIRFLLHSLTESNAESVLKELSEFIDCGIEGSFILLRTCLDHFTSHGTDL
ENPLLLLVISSVFKHLLDRPNFSTILCESLKSRDINQVTLENISNLLNLSMCERIGVGLA
VSDSENLDARLCGKNFCISQIEELCANAVSVDSTQQIQDIIMFLQRSEGLSKHLDSFMQM
LSLVQLKDVTEFVLSPLLSDELREEKFLRDVNLSHESLDNDFDSILAEMEKEMSMGDIMK
ELGYGCTVNATQCKEILSLFLPLTEITISKILGMIARNHTGLEDSRNIYSTFSLALGFSG
LSDLPSLNSWDVDVLLDTVKQLAPKVDWIRVMENLDHEGFYIPNEEAFSFFMSVYRRACQ
DAFPLHTICGSVWKNMEGQISFLKHAVLAPPEIFTFAHSGRQLAYIDGLHGDKLQLEHTN
QAWTCLDLLAILCELAERGHARSVQSILEVPLKHWPELLLLGMAHTNTAYNLLQYEVSFL
VFPLMLRNPLGSELIFQLWHLNPNLVLRGFVDAQNSDPDSMLRIVDICQELKILFSVLDM
IPYSCSIRLAAIASRQECLDLEKWLSNNLSTYKDVFFEECLKFLKGIHYGGSQDFSTKPF
YPSNAFSNIYLDTASTFLKVLRSNVGITASAKLSEEMEKLQDAVLESNPKLQNGEASDVP
ATEGYTDDIEAEANSYFQQMFSGQLTIEAMVQMLARFKESSVKREQLIFECMIANLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRSTHVELVAFIEQALLRISAGHSDSDVSAGNVELNGSG
NIQPGQQLSSAMELQQKYESAIDDRLKFTTPSVDVKPNVPPMGQTSIQPTGDASANQKNT
TNTPAALAPSPGFVRPSRGAASTRFGSALNIETLVAAAEKRETPIEAPGSDVQDKISFMI
NNISLANLEAKAKEFTEILKEQFYPWFAQYMVMKRASIEPNFHDLYLKFLDRVNSKALSK
EIVQATYENCKVLLGSDLIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIE
AYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEV
LFKNLSVDMKEITPTSLLKDRKREIDGNPDFSNKDVGASQTQMVAEVKSGIMSSLNQVEL
PLEVATPSNSGNHTHLLSQYATPLHLSSGTLMEDEKLSALGLSDQLPTAQGLLQATPSPS
PFSTNQLPAGIPNIGSLVVINQKLNSLGLHIHFQRAVPIAMDRAVKEIVSGIVQRSVSIA
TQTTKELVLKDYAMESDETRIFNAAHLMVASLAGCLAHVTCKEPLRGSISSQLRSSLQNL
GVASDLLEQAVQLVTNDNLDLGCAIIEQAATDKAIQTIDGEIAQQLSLRRKHREGVNTTF
FDTGMYAQGPLGVVPEALRPKPGHLSVSQQRVYEDFVRLPLQNQNSQAAQSTGSSVTASG
TGLSNQFGLSSGQLNSGYTSGLVTGLEGVSRSVDDAVEPSSVPQLSAPSGHIAADGVGIR
GPENDLVVPSFPSAASAPELHAVDASDSLKEPGSSTQPLPSPITTDRLATTISEPSLTTR
DALDKFQVISQKLEALVSSEAREAEFQGVIAEVPEIILRCISRDEAALAVAQKVFKVLYD
NASNTFHVGAHLAILIAIRDVCKLVVKELTSWVIYSEEERKYNKDITLGLIRSELLNLAE
YNVHMAKLIDGGRNKAATEFAISLLQTLVVDESSVISELHNLVDALAKVAAKPGSSEPLQ
HLVEIIKNPATSVAAISGVNVGKDDKARLARDKKAPVPSITNREDSSILESEDPAGFRDQ
VSILFAEWYRICELPGANEAAFNHFILQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSE
VINSGALQSPQQIQNLSFLAIDIYAKLVFSILKGSGKTALLSRILAVTVRFIQKDAEEKK
GSFNPRPYFRLFINWLPDLGSLEPIVDGANFQILTAFANAFHALHPLKIPAFSYAWLELV
SHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPFLRNAELGPPVHFLYKGTLRVLLVLL
HDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEINQSPR
ILSEVDGALKLKQMKADVDEYLKTRQQGSSFLADLKQKLLLPPSEAASAGTRYNVPLINS
LVLYVGMQAIQQLQARSPHAQSSANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLNAV
ANQLRYPNTHTHYFSFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELI
KNPRYNFWNRSFIRCAPDIERLFESVSRSCGGPKSADENMVQNWVPDTAH
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgttttcgactgctacctcctctcagattcgcttcctcctacacagtttgact
gaatctaatgctgaatccgttctcaaagagctttctgagtttattgactgtggaattgaa
ggaagcttcatactgctcagaacttgtttggatcatttcaccagtcatgggacagatttg
gaaaacccgctgttgctacttgttatttcttcggttttcaagcatctcttggacaggcct
aattttagtacaatattgtgcgagtcccttaaaagtagagatatcaaccaagttactctc
gagaacatctcaaatctgttaaacttgtcaatgtgtgaacgaattggagttggtctcgct
gtttcagattctgaaaatcttgatgcaaggttgtgtggaaagaacttctgcattagtcag
attgaggaactttgtgctaatgctgtatctgtggattctactcagcaaattcaggatatt
atcatgttcctccaacggtcagaagggctctcgaagcatttagattccttcatgcaaatg
ctatctttggtgcagttaaaagatgttaccgagtttgttttgtcaccacttctttcagat
gaattgcgagaggagaaatttttaagggatgtaaatctgtcacatgagtcccttgataat
gattttgattccatcttagctgaaatggagaaggaaatgagcatgggagatataatgaag
gaactgggttatggatgtacagtcaatgctacacaatgcaaggagattttgtccctcttt
ttaccgctgacggagattactatctctaagatacttggcatgatagctcgcaatcacact
ggtcttgaggacagtcgaaatatatattcaacttttagtctagctttgggtttcagcggt
ttgtctgatctaccatccttgaactcgtgggatgtggatgttctcctagacacagtgaag
caacttgcacctaaagttgactggataagggtaatggaaaatttggatcatgaaggtttt
tacattcccaatgaggaagcattctcatttttcatgtctgtatatagacgtgcatgccag
gatgcgtttcctcttcatactatttgtgggtccgtttggaagaatatggagggtcagatt
tctttccttaaacatgcggtattggcaccacctgaaatatttacatttgctcactctgga
agacagctggcttatattgatggattgcacggggataagcttcaacttgaacatacaaat
caagcatggacgtgtcttgatcttttggctatattatgtgaacttgctgagcgaggtcat
gctagatctgtgcaatcaattctggaggttcctcttaaacactggcctgagctattgcta
cttgggatggcacacaccaatactgcatataatctgcttcagtacgaagtttctttttta
gtcttcccattgatgttgagaaatcctcttggtagtgaattaatcttccagctatggcat
cttaaccctaatttagtgttacggggctttgtggatgctcaaaacagtgatccagactcc
atgcttaggatagttgacatctgccaagaattaaagatacttttttcagtactggatatg
attccttattcctgcagtatcagactggcagctattgcttcacgacaggaatgtttagac
cttgagaagtggttgagtaacaatttgagcacatacaaagatgtattttttgaggaatgt
ctcaagttcttaaaagggattcattatgggggatctcaagatttttcaaccaaacctttc
tatccttctaatgcgttttcaaatatttatttggacactgcttctacttttttgaaggtt
cttagatctaatgtgggtattactgcatctgctaaactatccgaggaaatggagaagttg
caagatgcagttctggagtcgaacccaaagctgcaaaatggcgaagcttcagatgtgcct
gcaacagaaggatatacagatgacattgaggcggaagctaattcctacttccaacaaatg
ttttccggtcagttgaccattgaagcgatggttcaaatgcttgctcggttcaaggaatct
tcagtgaaaagggaacaattaattttcgaatgcatgattgcaaatctttttgaggagtac
agattcttccctaaatatcctgaaagacagctaaaaattgctgcagttctctttggctct
gttattaaacatcagcttgtaactcaccttacactggggattgcacttcgtggtgtcctt
gatgcacttcgcaagcctgcagattcaaaaatgtttgtgtttggtacgaaggctctagag
cagtttgtggatcgcttgattgagtggccgcagtactgcaaccatattctgcaaatatca
catttgcgaagcactcatgtagaacttgttgctttcattgagcaggctctcctgaggata
tctgctggccattctgattcggatgtcagtgcaggaaatgtggagttaaatggttctggc
aacattcaacctggccagcagctttcgtcagcaatggagttacaacaaaaatatgaaagt
gccattgatgatcgacttaaatttaccacaccatctgttgacgtaaaaccaaatgtacct
cctatggggcaaacttcaattcaaccaaccggcgatgcttctgctaatcaaaagaataca
accaatactccagcagcgttggctccttcccctggttttgttcgtccttcacggggggct
gcttctaccaggtttggttcagctttgaatattgaaacgcttgttgctgctgctgagaaa
agagaaactcctattgaggctcccggatcggatgtacaggataagatttcatttatgatt
aataatatttcactcgctaatcttgaagccaaagcaaaagaatttactgaaattttgaag
gagcagttttatccctggtttgctcagtatatggtcatgaagagggctagcatcgagccg
aatttccatgatttgtacttgaagttcctggacagagttaattcaaaagctttaagtaaa
gagatcgttcaggctacttatgagaactgcaaggttctgttaggatctgaccttataaag
tcaagttcagaagaacgttcattacttaagaatttgggaagttggcttgggaaactaaca
attggcaggaaccaagtgctgcgagcccgtgaaatagatccaaaatctttgataattgag
gcatatgaaaaggggctaatgattgcagtaataccatttacttccaagatccttgaacca
tgtcaaagtagtttagcatatcaacctccaaacccttggaccatgggcattcttggacta
ctggctgagatttattcaatgcctaacttgaaaatgaacctcaagtttgacattgaggtt
ttattcaagaatctcagtgtggatatgaaagaaataacaccaacttctcttctcaaagac
cggaagagagaaattgatggcaatcctgatttttcaaataaggacgttggagcatctcag
acacagatggtagctgaagtgaaatccggtataatgtcttctttaaatcaagtggagctc
ccgctagaggttgcaacaccatcaaattctggaaatcatactcacctgttatctcagtat
gctaccccacttcatctttcttctggcacattaatggaagatgaaaagctttctgcactg
ggcttgtctgatcagcttcctactgcccagggacttttacaagctacaccatcgccttca
ccattctcaacaaatcagcttcctgcaggtatccctaatataggaagtcttgttgtgatc
aaccagaaacttaatagtttgggcttgcacattcattttcagagagcagttccaattgca
atggatagagctgtgaaagagattgtttctggtattgtgcagcgtagtgtctctatagct
acccaaacaacaaaggagctggttttgaaggattatgccatggaatcggatgagacccgg
atatttaatgctgcacatttgatggttgctagtctggctggatgtctagcacatgtgact
tgcaaggaacccttacgaggttcaatatcaagtcaactcagaagttctcttcagaatttg
ggcgttgccagtgatctgcttgagcaagctgtccagcttgttacaaatgataaccttgat
cttggttgtgccataatagaacaggctgctacagataaggcaatacaaaccattgatgga
gaaatagctcaacaactatcattaagaaggaagcatcgggaaggtgttaatacaaccttt
tttgacactggcatgtatgcacaaggtcctcttggtgttgtgcctgaggctctccgccct
aaaccgggacatctgtctgtttcacaacaacgagtctatgaggactttgttaggcttccg
ttgcaaaatcaaaacagccaagctgcacagtctactggttcttcagttactgctagtggt
actggtttgagcaatcaatttggtttgtcatcgggacaacttaactcgggatacacgtct
ggacttgttactgggcttgaaggagtatctcggtcggtagatgatgctgtagaacctagc
tctgtgccccaactaagtgcaccttcaggacatattgctgctgatggtgttggtatacga
ggtccagaaaatgatttggttgttccttctttcccctcggctgcttcagcccctgagcta
catgcagtcgatgcatctgacagtctaaaggaacctggatcctctacccagcccttgccc
tcaccaatcactactgatcggcttgcaactactatatctgaaccctcacttacaaccaga
gatgcattggataaattccaagttatttcacaaaagttggaggctttggttagtagtgag
gctcgtgaagctgaattccagggtgttattgcggaggttcctgagatcatactaagatgt
ataagtcgggatgaagctgctcttgctgtggctcaaaaggtgtttaaagttttatatgac
aatgcatcaaacactttccatgtgggtgcccatctcgctattctgattgccattcgcgat
gtttgcaagctagttgtgaaggaacttactagctgggtgatttactctgaggaagaacgg
aagtacaacaaggacatcactcttggccttattcgcagtgaattattgaatcttgcagag
tataatgttcatatggcgaaactaattgatggaggcaggaataaggctgcaacagagttt
gctatatcactcctccaaaccttggttgtggatgaatcgagtgtaatttcagaacttcac
aatcttgttgatgcattagctaaggttgctgcaaaacctggatcttctgagcctttgcag
catctggttgagataatcaagaatcctgctacaagtgtagctgctatatctggggttaat
gttgggaaggacgataaggctagacttgccagagacaagaaggctcctgtaccttccata
acgaacagagaagattctagtattcttgaatctgaagatccagccggttttcgcgatcag
gtgtcaattctatttgctgaatggtaccgaatatgtgagcttcctggtgctaatgaagct
gccttcaatcatttcatattgcaattacatcagaatggacttctgaaaggggatgatatg
actgatcggtttttccgtttactcacggagatttctgtggcacattgcttatcatctgaa
gtaattaactcgggtgcattacaatcaccccaacaaatacagaatctttccttccttgca
attgacatttatgccaagcttgtattttcaatcttgaagggatctggtaaaacggctctt
ttatctaggattctggcagtgaccgtaagatttattcagaaagatgccgaggagaagaaa
ggatcattcaatccaaggccatattttagattgtttattaactggcttcctgacctgggg
tctctagaacctattgttgatggtgctaactttcagatattgacagcctttgctaatgca
tttcatgctttgcaccctcttaagattccagcattcagctatgcctggcttgagttggtt
agtcatagaagttttatgccaaagatgcttactgggaatagtcagaagggttggccttac
atccaacgtttgcttgtagacatgtttcaattcatggaaccttttttgcggaatgctgag
cttggaccaccggttcattttctttataaaggcacacttagggtgttgctagtcttgctt
cacgatttccccgagtttctatgtgattatcattttaccttctgcgatgtgattcctcct
agctgcattcagatgcgaaatatcatccttagtgcgtttcctcgaaacatgagacttcca
gatccatccactcccaacttgaagattgacttgcttgcggaaatcaatcaatctccacgt
attctgtctgaggtggatggagctcttaaattgaaacagatgaaggctgatgtggatgag
tacctcaagaccaggcaacaaggatcctcgtttctggctgatctgaagcagaaattgcta
cttcctcccagtgaagctgcttctgctgggacccgttacaatgtgcctttgattaactcc
cttgtactttacgttgggatgcaggccatccaacaacttcaggcaagaagtcctcatgcg
cagtcaagtgctaatactgttacattagcagtattcttggtgggagctgctctcgatatt
tttcagactctgattgtggagttggatactgaagggcgttacctcttcctcaatgctgtt
gctaaccaacttcgatatccgaatacccacactcattacttttcttttgttctcctatac
ttatttgcagaatcaactcaggaaattatccaggagcagataacaagggtgttgttggaa
cgcctcattgttaatcgacctcatccatggggtctgctgattactttcattgagcttatt
aagaacccaagatataacttttggaaccgctccttcataagatgtgcaccagatatcgaa
agactattcgagtcagtgtctagatcctgcggcggacctaaatctgcagatgaaaatatg
gttcaaaattgggttcccgacaccgcccactaa
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integrated database retrieval system
