Cucumis sativus (cucumber): 101222664
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Entry
101222664 CDS
T02486
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03013
Nucleocytoplasmic transport
csv03015
mRNA surveillance pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101222664
09122 Translation
03013 Nucleocytoplasmic transport
101222664
03015 mRNA surveillance pathway
101222664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101222664
03041 Spliceosome [BR:
csv03041
]
101222664
03009 Ribosome biogenesis [BR:
csv03009
]
101222664
03012 Translation factors [BR:
csv03012
]
101222664
Enzymes [BR:
csv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101222664
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101222664
mRNA cycle factors
Stress granule specific factors
101222664
Spliceosome [BR:
csv03041
]
Complex C
Other components
EJC/TREX
101222664
Ribosome biogenesis [BR:
csv03009
]
Eukaryotic type
90S particles
Helicases
101222664
Translation factors [BR:
csv03012
]
Eukaryotic type
Initiation factors
eIF-4
101222664
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101222664
NCBI-ProteinID:
XP_004148574
UniProt:
A0A0A0L9P0
LinkDB
All DBs
Position
3:27154055..27158329
Genome browser
AA seq
410 aa
AA seq
DB search
MAAAATTSVVPPNRRRTISAPEDKLEFETTEGVEPILTFDQMGIKDDLLRGIYAYGFEKP
SAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTTSREVQALILSPTRELATQ
TEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAI
KLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILV
KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNN
FTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELY
IHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcagctacaacgagcgttgtgccaccgaatcggcgtcggacgattagcgcg
cctgaagacaaattggaattcgagacgacggagggggttgagccgatcttgactttcgat
cagatgggcattaaagatgaccttcttcgtggaatatatgcctacggttttgaaaagcca
tctgccattcagcagagagctgtgaggccgattattgagggtcgagatgttattgcgcag
gctcaatctgggactgggaagacttccatgattgcccttaccgtttgccagatggttgat
accacaagtagagaggtgcaagccttgatcttgtcccctacgagagaattggctactcag
acagagaaggttatattggccattggcgactacattaatatacaagcacacgcatgtatt
ggaggcaaaagtgtgggtgaagatatcagaaagcttgagtttggagttcaggttgtgtcg
ggaactcctggaagagtctgtgacatgatcaagagaaggacattgcgtaccagagccatt
aagttattagttttggacgagtctgatgaaatgctgagcagggggtttaaagaccaaatt
tatgatgtatatcgttatcttccaccagaacttcaggttgtcttgatttctgctaccctt
cctcatgaaatcctggagatgacaaacaagtttatgacagatcctgtgaggattcttgtc
aagcgtgatgagttgactttggagggtattaagcaattctttgttgcggttgaaagggaa
gagtggaagtttgataccttatgtgatctttatgataccttgactatcactcaagctgtc
attttctgtaacactaagcggaaggttgaatggttgactgaaaagatgcgaagtaataac
ttcacagtttcacatatgcatggggacatgcctcaaaaggaaagagatgcaatcatgggg
gagttccgatcaggaactacccgtgttctaattactactgatgtttgggcacgagggctt
gatgtgcagcaggtatcacttgtgataaattatgaccttccaaacaatcgagaactttac
attcacaggataggaaggtcgggtcggtttgggcgcaagggtgttgctattaactttgtg
aaaagcgatgacatcaagatcctgagagatattgagcaatactacagtacccagattgac
gagatgcccatgaatgttgctgatttgatttaa
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