Cucumis sativus (cucumber): 101222665
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Entry
101222665 CDS
T02486
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101222665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101222665
Enzymes [BR:
csv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101222665
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101222665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
101222665
NCBI-ProteinID:
XP_004148964
LinkDB
All DBs
Position
7:16767921..16775159
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AA seq
610 aa
AA seq
DB search
MASRFSYFQLHRRLYTTTSQWSVRQVRNSNFLGSLEDLKNDISDSDFIALSLQRTGSSSF
PWHRLQPFDTHDTAYCKAKYAAEKFQIIQFSLCPFSVRDSKLIAHPYNFHLFPRDELNIG
MPSYSFSCQVSHLTSMAREGFDFGAWVYDGISYLSRAQESIAKTQMGSQTLPPNINAVKP
SSELSVADTIFVQRVKSRVKNWKDAYDSSSKTSDALLSTLKKLIVGSEQYGSRPSIVIDV
YSERQVLLVLELLKEFSDDLVPVVISAKGGGTQAVRAILTSSKEDKILLEKELQYLEDKE
NKKFRGFREVIDVISASQKPIVSYNSLHDFTFIHSKFLAPLPTSIDEYASSLHSVFPRVH
DVKHLMSKIGGLSKPMSIAAAYSYLKKQYYAPSYLDIPVEAPGNDHKPHGHNAIRLCHLF
AQVCSVLKIDLSGVQSNDNECLASMLDECSNVSSFSPYHCKPKDEDVKIWAQGVRKVSCR
HLVFLWGLREGLTARLLKASLEGTHEVFCEEFDVRFVDKKCAIVVFSQPDLSETFLDAIN
SDNIVGSLREMVSEGLRAAGYETYKKICSFDLWEADLAESLERAILEADPETAQLDINYS
NDSFIYLNDL
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcggttctcatatttccagctgcacagacgcctctatacaaccaccagccaa
tggagtgtcaggcaagttcgcaattccaacttccttggctccttggaggatctgaagaac
gacatctccgattccgacttcatcgcactttctcttcagagaacgggttcttcttctttc
ccttggcaccgccttcagcccttcgacactcacgataccgcttattgcaaggccaagtac
gccgccgagaagtttcagattattcagttttctctctgccctttctctgttagggattcc
aaactaatcgcccatccgtacaactttcatttgttccccagagatgaattgaacattggg
atgccttcttacagtttttcatgtcaagtttcacatctaacatccatggctcgtgaaggt
tttgactttggtgcttgggtatatgatggcatatcatatttatctagagctcaagagtct
atagcaaaaactcaaatgggctctcaaactctgccacctaatattaacgctgtgaaacct
tcttctgaactgtcagttgctgataccatttttgttcaacgggttaaatcacgtgtaaag
aactggaaagatgcatatgattcaagctcaaaaacaagtgacgcattgctaagtacgttg
aaaaagctcatagtcggtagtgagcagtatggatcaagaccatctattgttatagatgtt
tatagcgaacggcaagttctacttgtgttagagctgttgaaggaattttctgatgacctg
gttcctgtagtaatttcagcaaagggtggaggaactcaagcagttcgtgccattttgaca
agctcaaaagaagacaagattctgcttgagaaggagcttcaatatcttgaagacaaagaa
aacaagaaatttcgtggttttcgagaggtgatagatgtgatttctgcttcacagaagcct
attgtctcctacaattctcttcacgattttacatttattcattctaaattccttgctccc
ctgcctactagcatagatgagtacgcatcttccttgcattcggttttcccacgagtgcat
gatgtaaagcatttgatgagcaagattggtggcctcagtaagccaatgagtatagccgca
gcttattcttacttgaaaaaacaatactatgcacctagttacttggatatcccagttgaa
gctccaggaaatgatcacaagcctcatgggcataatgctatacggttatgccatttgttt
gcacaagtctgctctgtacttaaaattgatctcagtggtgtccaatccaacgacaatgag
tgtttggcctcaatgctcgacgagtgttcaaatgtttcttcattctccccttaccactgc
aaacccaaggacgaggatgttaagatctgggcacagggtgttagaaaagtaagttgtagg
catttggttttcttgtggggattaagagaagggctgactgctcggttgctaaaagcttca
ctagaaggaacccatgaagttttctgtgaagagtttgatgttcgatttgtggacaagaaa
tgtgccattgtcgttttctcgcagccagacctatccgagaccttccttgatgcaataaat
agtgacaacattgttggatctttaagagagatggtatcagaagggctaagagctgcaggt
tatgaaacttacaagaaaatctgtagctttgatttatgggaagcagatttagctgagtcc
ctggagagggccattttggaagccgatcccgaaactgctcagttagacatcaattactct
aatgattctttcatttatttgaatgatctttga
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