Cucumis sativus (cucumber): 101222826
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Entry
101222826 CDS
T02486
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101222826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
101222826
Enzymes [BR:
csv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101222826
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101222826
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
SNU71_RBD
Motif
Other DBs
NCBI-GeneID:
101222826
NCBI-ProteinID:
XP_004148252
UniProt:
A0A0A0L4V6
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All DBs
Position
3:3584419..3588372
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AA seq
700 aa
AA seq
DB search
MNPSHPLWALQRRLFCFIRTTNYSSAAVTAPSTASNSSFPLKNVTKSNFEAALSELRSHV
RAADFVAIDLEMTGITSAPWRDLLEFDRFDVRYLNVKDSAEKFAVLQFGICPFRWDSAKN
SFVAHPHNFFIFPRHEIEVDGPSSEFLCQTTSMEFLAKYQFDFNACIYEGISYLSRAHED
AARKRLNFAYGDEMLDASSNVTNVMDKKRVGIPDVLFKERMKNRLHEWRDRLLSERNMEF
QGQEGSNDHKRQFQTIFFKMRPALTLSDFTSHQIKLIQLVIKKHFEDLCFVVVNDGNADL
QQLVVFVDSRDDKELLMQEVNRDQKEVNEMKIQSAIGFRHVIDLLSSEKKLIVGHNCFLD
MLHIHRKFIGSLPSTTEEFVSSLGKHFPYIMDTKILLNGNNILIRRMNKSNTSLSSAFGL
LCPHIAFSSQRVSAWNSGVQVEVQVDDLRSSKWNSGDTHEAGYDAFMTGCVFAQACDLMG
IDFVDRSTSENLLGNEILQKHINRLYLSWARGDIIDLSTGNQVTESFTTRKHRAKVSFQN
IVLIWGFPTNLTARKIKACISKAFGQTNVSSVNHLDESAVFVQFTKPEMVSEFLDLKEKL
EKRDDPLSVLHPLTELFDVRTTHAAGYEAYKKICSSPMSKHLFSDQAEAVGINRKTTSIK
SEEKRSRMHQAVETTEIQGTEVEANDLSNTNYHSLRSSSM
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaatccatctcaccctctttgggcccttcagcggcggcttttctgcttcatcagaact
acaaactactcctccgccgccgttactgctccgtccaccgcctcaaactccagttttccc
ctcaagaacgtgaccaagtcgaacttcgaagctgcactatcggaacttcgaagccatgtc
cgagctgcggacttcgttgccatcgacctcgaaatgaccggcatcaccagcgccccttgg
cgcgacttgttggagttcgatcgctttgatgttcgttacctcaacgtcaaggactctgct
gagaagttcgccgttcttcaattcggcatctgcccgttccgctgggactccgccaaaaat
tcattcgtcgctcacccgcacaacttttttattttcccacgccatgaaattgaagtcgat
ggcccttcttccgagttcctctgccagacaacctccatggaattcttagctaaataccaa
tttgatttcaacgcttgtatatatgaaggaatatcttatttgtccagagcacatgaagat
gcagcacgtaaacgtttgaattttgcatatggggatgaaatgttggatgcatcttctaat
gtgactaatgttatggataagaagagggtcggcattcctgatgtcttattcaaggaaaga
atgaaaaacagattacatgaatggcgggacagattactatctgaaagaaatatggagttt
caaggccaagaaggctcaaatgatcacaaacgacaatttcaaaccattttcttcaagatg
cgacctgctcttactttgagtgatttcacctctcatcagatcaaattgattcagctggta
attaagaagcattttgaggatctttgttttgttgtcgtgaatgatggtaatgcagatcta
caacagttagtcgtgtttgtggattctagagacgataaagagctgctcatgcaagaggta
aaccgtgaccagaaggaagtaaatgaaatgaagatacaatctgcaattgggtttcgtcat
gttattgatcttctttcatcggaaaagaagctaattgttggtcataattgtttccttgat
atgcttcacatacacagaaaatttattggctcacttccttcaaccactgaagaatttgtc
tcttctttgggaaaacactttccgtacatcatggataccaaaattctcttaaatggcaat
aacattcttatacgacggatgaataagtccaacacatctctatcctccgcctttggctta
ttatgcccgcatattgccttcagctctcagagggttagtgcctggaactctggtgtgcaa
gtggaggttcaagtagatgatctaagatcctccaaatggaactccggagatacacatgaa
gctgggtacgatgcttttatgacaggatgtgtatttgctcaagcatgtgatcttatggga
attgattttgtagatcgttcaacttccgaaaatttgcttggcaatgagatattgcaaaag
cacatcaatcgtctgtatttgagttgggccagaggagatattattgatctaagcactggt
aaccaagtgactgagtctttcacgactagaaagcatagagcgaaagtatcttttcagaac
attgttctaatctggggatttcccaccaaccttactgcaagaaagatcaaagcttgcatc
tctaaagctttcggccagaccaatgtctctagtgtcaaccatttagatgaaagtgctgtg
tttgtgcagtttacaaagccagaaatggtttccgaatttctcgacttaaaggagaagctg
gagaagcgtgatgatccattatcagttttgcatcctctcactgaacttttcgatgttagg
accactcatgctgcaggctacgaagcatacaagaaaatttgcagctctcccatgtccaaa
cacttgttttctgatcaggcagaggcagttgggattaaccgaaagacgacatcgataaaa
tctgaggaaaaaaggagccggatgcaccaagctgttgaaactactgaaatacagggaacg
gaggtggaagcaaatgatctaagcaacactaactaccacagtttacgatcttcttcaatg
taa
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