KEGG   Cucumis sativus (cucumber): 101222849
Entry
101222849         CDS       T02486                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03082  ATP-dependent chromatin remodeling
csv03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    101222849
   03083 Polycomb repressive complex
    101222849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:csv03036]
    101222849
Chromosome and associated proteins [BR:csv03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     101222849
  Histone modification proteins
   HAT complexes
    HATB complex
     101222849
   HDAC complexes
    Sin3A-HDAC complex
     101222849
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     101222849
    PRC2.2
     101222849
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     101222849
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    101222849
  Chromatin remodeling factors
   NuRD complex
    101222849
   NuRF complex
    101222849
   NuRF complex (fruit fly)
    101222849
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_RIG_1st WD_LRWD1 eIF2A MIOS_WD40 Beta-prop_HPS5 NBCH_WD40 Beta-prop_WDR19_1st WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214 Beta-prop_TEP1_C Phage_CRI
Other DBs
NCBI-GeneID: 101222849
NCBI-ProteinID: XP_004133950
UniProt: A0A0A0L971
LinkDB
Position
3:8223552..8226838
AA seq 423 aa
MGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLEDSENDARHYDDDRADAGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVFVFDYSKHPSKPPLDGTCNPDLRLRGHNTE
GYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKTLEAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLVWDLRTPSANKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKL
FDLRKISTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPEEPP
KAS
NT seq 1272 nt   +upstreamnt  +downstreamnt
atggggaaggacgacgaagagatgcgtggagaaatggaggagagactgataaacgaggag
tacaagatttggaagaagaatactccatttctctacgatttggttattactcatgcccta
gagtggccttcactcactgtagaatggttgcctgaccgggaggagcctcctggcaaggat
tactccgttcagaagatgattttggggactcatacctccgagaatgagcccaattatctc
atgctcgctcaggttcagcttccgcttgaggattcagagaacgatgcgcgtcattacgat
gatgaccgtgctgatgcgggtggcttcgggtgtgccaacggcaaggtacaaataatccag
caaataaatcacgatggcgaagtcaatagagcccgttacatgcctcaaaatccatttata
attgctacaaagactgtcagtgccgaagtttttgtttttgactatagtaaacatccatcc
aaaccacctctagatggtacatgcaatcccgatttgagattgaggggtcacaataccgaa
ggttatggtttatcgtggagtaagttcaagcagggccatttactaagtggttctgatgat
gcacagatttgtttatgggacattaatgctactcccaagaacaaaacccttgaggctatg
caaatttttaaggttcatgaaggtgttgtggaagatgttgcatggcatcttaggcatgaa
tacttgtttggttcagtaggtgatgaccaatacctactcgtatgggatttgcgaactcct
tcagctaataagcctgtacagtctgtagttgcccatcaaagtgaggttaattgcttggca
ttcaatcccttcaatgagtgggttgtagccacggggtcaactgataagacggttaagttg
tttgatctacgtaagatcagcactgcactccatacctttgactgtcacaaagaggaggtt
ttccaggttggttggaatccaaagaatgaaacgatcttagcttcttgttgtcttggtagg
aggctcatggtttgggaccttagcaggattgatgaggagcagacaccagaggatgcagaa
gatgggccgccggaattgctgttcattcacggtggtcatacgagtaaaatatcagacttt
tcttggaacccatgcgaggactgggtggttgccagtgtagctgaagataacatactacaa
atctggcagatggctgagaacatctaccatgatgaagatgatttgcctgaggagcctcca
aaggcctcttaa

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