KEGG   Cucumis sativus (cucumber): 101222898
Entry
101222898         CDS       T02486                                 
Name
(RefSeq) THO complex subunit 4D
  KO
K12881  THO complex subunit 4
Organism
csv  Cucumis sativus (cucumber)
Pathway
csv03013  Nucleocytoplasmic transport
csv03015  mRNA surveillance pathway
csv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101222898
  09122 Translation
   03013 Nucleocytoplasmic transport
    101222898
   03015 mRNA surveillance pathway
    101222898
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csv03019]
    101222898
   03041 Spliceosome [BR:csv03041]
    101222898
Messenger RNA biogenesis [BR:csv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     101222898
    TREX complex
     101222898
Spliceosome [BR:csv03041]
 Complex C
  Other components
   EJC/TREX
    101222898
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101222898
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 RRM_11 YHR127W_C Btz
Other DBs
NCBI-GeneID: 101222898
NCBI-ProteinID: XP_004145851
LinkDB
Position
3
AA seq 286 aa
MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI
GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG
LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
NT seq 861 nt   +upstreamnt  +downstreamnt
atgactactcctttggatatgtcactagaggatgtgataaagaagaataatcgtgaaaag
cttagagcacgaggtagggcccgtcgtgggcgtggagcaggtgggtcttttaatggtgga
agaggagtagtgataggatcagttcgtagaggtcctctcggcataaatgcacgggcatct
gcttactcaattcgcaagcccccacacagaatgaagaatgttcaatggcagcatgattta
ttcgaagatagtcttagagcttcagggatttctggaattcaaattggcacaaagttgtac
gtttccaacttggattatggggtaaccaaagaagatataaaggagttgttctctgaaatt
ggagacgtgaaaagatttgcaattcattatgacaaaaatggtcgtccaagtggctcagct
gaggtggtatatactcggcgaagtgatgcatttgctgctctgaagcgctataacaatgtg
ttattggatgggaagccaatgaagattgaaatgcttggtgataatgctgaaatgccggtt
tctgcacgtataaatgttactggaacaaatggaagaaacaggaggacagttgttttaacg
tctgaatctggtcgtaatgctacttccaacgtggttaactcttttcctggtccaagccat
cgtggaggcctgaggaatgctcgtggccgtgggcgaggtgcttggagccgtggtgtaggt
ctaggaggaggaagtggaggaggccgtggccgagggcgtggtcgtggccgtgggcaagga
aggaaaaaacctgtagagaagtcctcagatgaacttgacaaggagcttgaaaactaccat
gcagaagccatgcaaacctga

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