Cucumis sativus (cucumber): 105435712
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Entry
105435712 CDS
T02486
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv00040
Pentose and glucuronate interconversions
csv01100
Metabolic pathways
Module
csv_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105435712
Enzymes [BR:
csv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
105435712
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
105435712
NCBI-ProteinID:
XP_031741769
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Position
5:complement(30016187..30019321)
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AA seq
388 aa
AA seq
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NVLDYGAVGDGNTEDTQAFLDAWKAACKSSNSKTSPIMLVPPGKSFLLQPFTLDGYDCKS
TKTNIISIVIDGELIAPKDRWAWKYEGKQCRQWILLKHMKGLVVKGSGTINAQGNTWWDL
CTNEEKVCTRRPTSLILEDSEKVHIKNIAFKDSPQMHMAIENSKYVFVKNLYIEAPGDSP
NTDGIHIQHSRKISITSSSIRTGDDCISIGDGSYRINISKIACGPGHGISIGSLGKHGNH
EKVEFIHVKDVTFTDTTNGVRIKTWQGGSGYARNIIFEGIVSRGSLNPIIIDQFYCDHEK
CKNQTSAVKVSNVLYNRVSGTSKSKIAVNLACSETEPCRNILMKDIKLKSIIEDEEEEDI
TSSYCKNVVDGHKDGSVIPNVPCLKQTN
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
aatgtacttgactatggagctgttggagatggaaatactgaagatactcaagcttttctt
gatgcttggaaagctgcatgtaaatcttcaaattcaaagacttctccaataatgttggtt
cctcctggcaaatcatttttacttcaacctttcactctcgatggttacgattgcaagtct
acaaaaacaaatatcattagtattgtgattgatggagaattaattgcaccaaaagatcga
tgggcatggaaatacgaaggaaaacaatgtcgacaatggattttattgaagcatatgaaa
ggtttagtagttaaaggttctggcactatcaatgctcaaggaaatacatggtgggatcta
tgcacaaatgaagaaaaagtttgtacaagaagaccaactagtttaattttggaagattcc
gagaaagtgcatataaaaaatatagcttttaaggatagtccccaaatgcatatggctatt
gaaaactcaaaatatgtatttgttaaaaacctatatattgaagcaccgggtgatagtcct
aataccgatggaattcatattcaacattctcgaaaaatctccattactagttctagtatt
cgtacaggagatgattgcatttcaattggggatggttcatatagaatcaacatctccaag
attgcatgtggtccgggacatgggattagtattggaagcctgggtaaacatggcaatcat
gaaaaagttgagtttattcacgtgaaagatgtaacttttaccgacacaactaatggagtt
agaattaaaacatggcagggtgggagtggatatgcaagaaacatcatctttgaaggcata
gtttctcgtggctcattaaatccaatcatcatcgatcaattttattgcgaccatgaaaaa
tgcaaaaaccaaacttcggcggtaaaagtcagcaatgtattgtacaatagagtatcggga
acatcaaaaagtaaaattgcagtgaatcttgcttgtagcgaaacagaaccatgtagaaat
atcttgatgaaagatattaaattaaaatctatcattgaagatgaagaagaagaagatatc
acatcatcgtactgtaaaaatgttgttgatggacataaagatgggtctgtaattccgaat
gttccttgcttaaagcaaacgaattag
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