Cucumis sativus (cucumber): 116401607
Help
Entry
116401607 CDS
T02486
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116401607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
116401607
03041 Spliceosome [BR:
csv03041
]
116401607
03036 Chromosome and associated proteins [BR:
csv03036
]
116401607
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116401607
Spliceosome [BR:
csv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116401607
Complex B
116401607
Complex C
U2 SnRNP specific factors
116401607
Chromosome and associated proteins [BR:
csv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
116401607
TFTC complex
116401607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
MAP1B_neuraxin
Motif
Other DBs
NCBI-GeneID:
116401607
NCBI-ProteinID:
XP_031738107
LinkDB
All DBs
Position
3:31674525..31690804
Genome browser
AA seq
1376 aa
AA seq
DB search
MAVSEEECSSAKSRSSSSTSSSTYYLAKCVLRGSVVLQVLYGHIRSPSSLDVVFGKETSI
ELVVIGEDGVVQSVCEQAVFGTIKDMAILPWNERFRPSYTQMLGKDLLIVISDSGKLSFL
TFCNKMHRFLPMTHIQLSNPGNSRNQIGRMLASDSSGCFIAASAYENRLALFSTSISAGS
DIVDKRITYPPDSEGDSVAPRSMQKASICGTIWSMCFISKDRGHLTQDNNPILAVLLNRR
GAILNELLLLGWNIREQTIHVICQFLEDGPLAYEVVEVPQSYGFALLFRVGDALLMDLRD
VHSPCCVYRIGLHFPPNVEQNFIEESYRVQDADDEGLFNVAACALLELRDYDPMCIDSDD
GSLNTNQNHVCSWSWEPGNNRNRRMIFCMDTGDLFMIEMNFDSDGLKVNQSACLYKGQPY
KALLWVEGGYLAALVEMGDGMVLKLENGRLIYANPIQNIAPILDMSVVDKHDEKQDQMFA
CCGMAPEGSLRIIRNGISVENLLRTSPIYQGITSIWTIKMKRSDTYHSYLVLSFVEETRV
LSVGLSFIDVTDSVGFQSDTCTLACGLLDDGLVIQIHQNAVRLCLPTKIAHSEGIELSSP
ACTSWFPDNIGISLGAVGHNVIVVSTSNPCFLFILGVRKVSGYDYEIYEKQYLRLQYELS
CISIPEKHFAKKESNFPMNSVENSIMSTLLNEVSCDTIIVIGTHRPSVEILSFVPSIGLT
VLASGTISLMNILGNAVSGCIPQDVRLVLVDRFYVLTGLRNGMLLRFEWPHTATMNSSDM
PHTVVPFLLSCSDSFSKEFHNADILEKHEDEIPSCLQLIAIRRIGITPVFLVPLTDRLDS
DIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCSADCPSGLLFVAESSLHLVEMVHT
KRLNVQKFHLGGTPRKVLYHSESKLLLVMRTQLINDTSSSDICCVDPLSGSILSSHKLEI
GETGKSMELVRNGNEQVLVVGTSLSSGPAIMASGEAESTKGRLIVLCLEHVQNSDTGSMT
FCSKAGLSSLQASPFREIVGYATEQLSSSSLCSSPDDASSDGIKLEETEAWQLRVVYSTS
LPGMVLAICPYLDRYFLASAGNAFYVCGFPNDSFQRVKRFAVGRTRFMITSLTAHVNRIA
VGDCRDGILFFSYQEDAKKLEQIYSDPSQRLVADCTLLDVDTAVVSDRKGSIAILSCSDR
LEDNASPECNLTLNCAYYMGEIAMTLRKGSFSYKLPADDLLRGCAVPGSDFDSSHNTIIA
STLLGSIVIFTPLSRDEYELLEAVQAKLAVHPLTSPILGNDHYEYRSRENPIGVPKILDG
DILTQFLELTSMQQELVLSSSVGSLSAVKPSSKSMPASIPINQVVQLLERIHYALN
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcggaggaggaatgttcatctgcgaaatcgcgatcttcatcttccacttct
agttccacgtattacttggctaagtgcgttctcagaggcagtgttgttctccaggttctt
tacggtcacatacgctctccgagctctctcgatgtcgtctttggcaaggagacatccata
gagttggtggttataggcgaagatggcgttgtacaatctgtatgtgagcaggccgtattt
ggcactattaaagatatggccatcctaccatggaatgagaggtttcgaccctcatataca
cagatgctgggcaaggatcttctcattgtaatttccgattctggaaagctttcatttctc
acattttgcaataaaatgcacaggtttcttcctatgacacatattcaactttccaatcct
ggaaattcaaggaatcagatagggagaatgctggcctcagattcgagtggatgctttatt
gctgctagtgcatatgaaaatcgtttggctttattctccacttcaatatctgctggtagc
gacatcgttgataagagaataacttatcctcctgatagtgaaggagattcagttgctcct
cgaagcatgcagaaagccagtatatgtggtaccatatggagtatgtgctttatttcaaaa
gatcgtgggcaccttacacaggacaacaatcctatactggctgttcttcttaataggaga
ggagcgattttgaatgaactgctattattgggatggaatattagggaacagactatacat
gttatatgtcaatttttggaagatggacccctggcttacgaggttgttgaagttcctcaa
tcttatggatttgcacttctatttagggttggtgatgctctcttgatggatcttagagat
gttcacagtccctgttgtgtttatagaattggcttacacttcccacccaacgtggaacaa
aactttattgaagagtcatatagagtacaagatgcagatgacgaaggactatttaatgta
gctgcatgtgctctgctggaactgagggattatgatcccatgtgcattgacagcgatgat
ggcagtttgaatacaaaccagaatcacgtgtgctcttggagttgggaaccgggcaataat
agaaaccgaaggatgattttctgtatggatacaggagatctcttcatgatagaaatgaat
tttgactctgatggcctgaaagtgaatcagtctgcttgtctttacaaaggtcaaccatac
aaggctcttctgtgggttgaaggtggatatttggctgcattagtggaaatgggggatgga
atggtcctgaaattagaaaatggaagactgatatatgcaaatcccatccagaacattgcc
ccaattttggatatgtcagttgttgacaagcatgatgagaaacaagaccaaatgtttgca
tgctgtggaatggcacctgaagggtctttaaggattattcgaaatggtatcagtgtagaa
aatttgttgaggacatctccaatttaccaaggtataacgagtatatggaccattaaaatg
aaacgaagcgatacttatcattcatatttggtactgtcatttgttgaagagacccgagtt
ctatcagttggcttgagttttattgatgtcactgattcagttggtttccagtctgacacc
tgtactttggcatgtggtcttttagatgatggtctagtgattcaaatacatcaaaatgca
gtaaggttatgtttacccaccaagatcgcccattctgaaggcattgagttatcttctcca
gcttgcacatcttggtttccagataatattggtataagcttgggagcagttggacataat
gtgattgttgtttccacttctaacccatgcttcttatttatccttggagttcgaaaggtt
tctgggtatgactatgaaatatatgaaaagcaatatttgagattgcagtatgaattgtca
tgcatttcaattcctgaaaaacattttgccaaaaaagaatcaaattttcctatgaactca
gttgaaaatagcattatgtccactcttttgaatgaggtgagttgtgatactattattgtt
ataggcacccataggccttccgtggagattttatcttttgttccctctataggccttacg
gtccttgcttctggaactatttcattgatgaatatattagggaatgctgttagtggatgc
attccccaagatgtaagacttgttttagttgacaggttttatgttcttacggggctcagg
aatggaatgttgcttcgttttgagtggcctcatactgctacgatgaactcatctgatatg
cctcacactgttgttccctttttattgtcttgttccgattctttcagcaaggaatttcat
aatgctgatatattggagaagcacgaggatgaaattccatcttgtcttcaattgattgct
attcgtcgtatagggatcactcctgtttttctggttcctttgacggataggctggattct
gatataattgctctaagtgataggccgtggttattacatagtgctagacacagtctttca
tatacttccatatcatttcaaccgtcaacacacgtaactcctgtgtgttctgctgactgc
cctagtggactactatttgttgcggaaagcagtctacatttggtagagatggtgcatacc
aagagattgaatgtgcagaaatttcaccttgggggcaccccaaggaaggtcctatatcac
agtgagagcaaattactgcttgtgatgaggactcaattgattaatgatacatcttcatct
gacatatgctgtgtagaccctcttagtgggtcaattttatcatctcacaagcttgaaatt
ggagagacaggaaaatccatggagttggtgaggaatggaaacgaacaagttcttgtggtt
ggaacaagcttgtcttctggtcctgccataatggccagtggtgaagctgaaagtaccaag
ggtcggttgattgtcctctgccttgaacacgttcaaaactcagatactggctcaatgact
ttttgttcaaaggcaggattatcatctcttcaagcctcaccgtttcgtgaaattgttgga
tatgctacagaacagttatcaagcagtagtctttgtagcagtccagatgatgcaagctct
gatggtataaaacttgaggaaacagaagcatggcaattacgggtggtttattcaacttcc
ttgcctggaatggttcttgctatctgcccttatcttgatcgatatttcttggcatctgct
ggtaatgctttttatgtatgtggtttcccaaacgatagtttccaaagagtgaaaaggttt
gcagttgggaggacacgttttatgataacatctcttacggctcatgttaatagaattgct
gttggcgattgtcgtgatggtattctatttttctcttatcaagaggatgctaaaaagctg
gagcaaatttattctgatccttcacagaggctagttgctgattgtactcttttggatgtt
gacactgctgttgtttcagatcgtaagggaagcattgctatcttatcatgttctgatcgt
ttagaagataatgcaagtccggaatgcaacttaacgctgaactgtgcttattacatgggt
gaaattgctatgaccttgaggaaaggatctttttcatacaaacttccagctgatgatttg
ttgagaggttgtgctgtccctggctctgattttgactcatcacacaacactattattgcc
agtacactattagggagcattgtaatcttcactcctttgtcgagggatgagtacgaactt
ttggaggctgttcaggctaaacttgcagttcatccactaacttcccccattttggggaat
gatcattatgagtatcgtagccgtgaaaatcctattggagtaccaaagatacttgatggt
gatatcctaactcagttcttggaacttacaagcatgcaacaagagttggtattatcgtca
tctgttggctcactaagtgcagttaaaccgagctcaaagtcaatgccggcgtctatcccc
atcaatcaggttgtgcagctgcttgaaagaattcactacgcactcaattag
DBGET
integrated database retrieval system
