Cucumis sativus (cucumber): 116401720
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Entry
116401720 CDS
T02486
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv00040
Pentose and glucuronate interconversions
csv01100
Metabolic pathways
Module
csv_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
116401720
Enzymes [BR:
csv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
116401720
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
116401720
NCBI-ProteinID:
XP_031736043
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Position
1:complement(31187878..31189710)
Genome browser
AA seq
389 aa
AA seq
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MANPTKSLVFIVFFHLFIQISTAANYNVISFGAKPDGKTDSTQSFLKAWTSACSSSTRST
INVPKGRFLLTPITFRGPCKNKITFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGG
TIDGKGTAYWACKNSAKNCPPGARSITFNWANNIILSGLTSINSQQTHVVINSCNNVVVK
NVKIMAPDQSPNTDGIHVQSSTNVTITGSTIKTGDDCISIGDGTKNLFMSDIKCGPGHGV
SIGSLGKEANENGVENVTLINAVFTKSDNGVRIKTWPTPSNGFVRHVIFQNIVMINVKNP
ILIDQNYCPNHQSCSLQSSGVKINDVTYKSIEGTSATSEAVTFDCSSSSPCSDIKLEDIK
LTYKNKTTISSCKNIGGSSIGLVVPETCF
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggccaacccaaccaaaagtctagtcttcatcgtcttcttccatttgttcattcaaatc
tcaactgctgccaactacaatgtgatatcatttggtgcaaaacccgatggaaaaacggac
tcgacccaatcatttcttaaggcgtggacgtctgcatgtagctcctccacacgatccacc
atcaacgtccctaagggaaggttcttgctcacacccatcacgtttagaggtccatgtaag
aacaaaattacatttttgttgaacggaacacttgttgcacctcttgactatcgtgccctt
ggagattctgggtattggattttgttcatcaaagtcgatggagtttctttcgtcggtggc
actattgatggaaaaggcactgcctattgggcttgcaagaactctgcaaaaaactgtcct
ccaggagctaggtcaataacgttcaattgggcgaacaacataatacttagtgggttaaca
tcaatcaatagtcaacaaactcatgttgtgatcaatagctgcaacaatgtggtggtgaag
aatgtgaagataatggctccagaccaaagccccaatactgatggtattcatgtgcaatcc
tccactaacgtaaccatcactggaagtaccattaaaactggagatgattgcatttctatt
ggtgatggaacaaagaatttgtttatgagtgatatcaaatgtgggcctggccatggcgta
agcatcggaagcttaggaaaagaggccaacgaaaacggagttgaaaatgtaacattgata
aatgcagtgttcacgaaatccgataatggtgttaggataaagacatggcctacacctagc
aatggtttcgttagacatgttatctttcaaaatatcgtcatgatcaatgttaaaaatcct
atcttaatcgatcaaaattattgtcccaaccaccaaagttgttctctccagagttctgga
gtgaagattaatgatgtgacatacaaaagtattgaaggaacatccgcaacgtcagaagct
gtaacatttgattgtagttctagtagtccgtgcagtgatataaaattggaagacataaag
cttacgtacaaaaacaagacaacaatttcatcatgcaagaacattggtggatcgagtatc
ggacttgtggtgcccgagacttgcttttga
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