Cucumis sativus (cucumber): 116403172
Help
Entry
116403172 CDS
T02486
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor BTAF1-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
csv
Cucumis sativus (cucumber)
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csv03021
]
116403172
Transcription machinery [BR:
csv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
116403172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
HEAT_ECM29
TOR1L1_N
HEAT_EZ
TPR_Trm732_C
HEAT_2
mTOR_dom
TPR_TNPO3_IPO13_3rd
RIX1
HEAT_Maestro
Motif
Other DBs
NCBI-GeneID:
116403172
NCBI-ProteinID:
XP_031739538
LinkDB
All DBs
Position
4:11226878..11268968
Genome browser
AA seq
2057 aa
AA seq
DB search
MAQQSSRLHRLLTLLDTGSTQATRFTAARQLGEIAKSHPQDLTSLLKKVSQYLRSKNWDT
RVAAAHAIGAIAQNVKHTSVSELIDCVGLKISEAGLSVSIKDVLTISDVQSAFKSFDMNN
VLEFGALVASGGQEFDVTSENIKSPKERLARQKQNLRRRLGLDACEQFIDVNDMIRDEDL
ILDKVNMYDNGGDRQMFPSKSIHNIQQFVANMVPYIVSKRPSAREMNLLKRKAKINSKDQ
TKHWSEEGETDVAGTQLVETPRGLGPDLLSSQKSAVSVNNDDDSGDHDGDGQWPFHNFVE
QILLDMFDSNWEVRHGSVMALREILTHQGGCAGVILSDISIDGAPFSTLEDESVPNKLKR
ERDIDLNTQLMEDEFEFKPKRPKFEDASCPHVNVMVSADEDINLGVNLKVETDDRLMPDD
QPGVQFEICSVKVEDHPNGSCYPHVDTPTAAVEECPDSKLPCEDTTMLTNFSENRELRNL
VKLTRHSWLKNFEFLQDCAIRLLCILLLDRFGDYVSDQVVAPVRETCAQALGAVFKYMHP
TLVNETLHILLQMQFRQEWEIRHGSLLGIKYLVAVRKELLHDLLSRILPACKAGLEDPDD
DVQAVAADALIPAADSIVSLKGPTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQK
EMFPNMFEVLTLRETQEYDLNEAIRVHDTXEGICLQENPYALTSLAPRLWPFMRHSITSV
RYSAIRTLERLLEAGLKQNISVPSAAIWPTTILGDTLRIVFQNLLLESNDDILECSERVW
RLLLQSQVKELELVARSYASSWMELATTPYGSTLDSSKLFWPVALPRKSHFRAAAKMRAV
KLENESSSRVGMELAKVTISHERNGDSSSSFSKIIVGADADISVTLTRVVTAXSLGIFAS
KLNEGSLQDVISSLWNAFKSSSGVRRQVASIVLISWFKEIRNKENSIGHGAISCLPNYLR
EWLLDLLTCSDPAFPTKDSSLPYTELSRTYSKMRGEATQLVRAIESSGLFKDSFSGTQID
FENLTADDAINFASKISTPKISTPIGDIDENGLEGRQAIDDIESLKQRLLTXSGYLKCVQ
SNLHISVSAMVAAAVVWMSELPARLNPIILPLMASIKREQEEILQQKAADALAELICQCV
LRKPGPNDKLIKNICTLTCMDASETPQAAVICSMEVIDEQDILSSGTNTRKSRTKVHVPS
GTDDRSRIEGFISRRGSELVLRCLCEKLGAALFEKLPKLWDYLTEILLPATVENVTAEDE
QKIMHTIESVKDPQTLINNIQVVRSLAPMLNEMLKPRLLTLLPCIFRCIRHSHVAVRLAA
SRCITSMAKSLTTDVMGAVIVNAIPMLEDMNSVNSRQGAGMLISLLVQGMGVELVPYAPL
LVVPLLRCMSDCDQSVRRSVTRSFAALVPLLPLARGLPPPSGLSEVFSKNKEDAQFLEQL
LDNSHIEDYKLCTELKMTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVAC
DIVERLTLNDRENIPPSLIICPSTLVGHWAFEIEKYVDVSILSTLQYVGSVQERTSLREC
FNKYNVIITSYHVVRKDVEYLSQFHXNYCILDEGHIIRNAKSKITLAVKQLRSQNRLVLS
GTPIQNNVMDLWSXFDFLMPGFLGTERQFQSTYGKPLLAARDSKCSARDAEAGALAMEAL
HKQVMPFLLRRTKDEVLSDLPEKIIQDRFCDLSPVQLKLYERFSGSHVRQEISSMVKSNE
SXKYHRKAVVQRASSHIFQALQYLLKLCSHPLLVTGEKMSDSMKCILTELLPDSSDIISE
LHKLHHSPKLVALSEILEECGIGVDTLGSDGAVSCGQHRVLIFAQHKALLDIIERDLFHA
HMKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHD
WNPMRDHQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQKFKVSIANAVINSENASMK
TMNTDQLLDLFTTAETSKKGAASASSKQSDGDFDGEVKAMGGKKGLKAILGGLEELWDQS
QYTEEYNLNQFLAKLNG
NT seq
6174 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcagtcgtcccgacttcatcgtcttctaactctcttggatactggttcaaca
caagcaacaagatttactgcagctcgtcagttgggggaaatcgcaaaatcccatcctcag
gacttgacatctcttttgaaaaaggtatctcagtatttacgcagtaaaaattgggataca
cgggttgcggctgcacatgctattggggctattgcacagaatgttaagcacacatctgtg
tctgagctcattgactgtgttggattaaagatttctgaggctggcttgtctgttagtatc
aaggatgtcctgacaatttctgatgttcagtctgcctttaaaagttttgatatgaataat
gtgcttgaatttggcgccttggtggcatctggaggacaggagtttgatgtcaccagtgaa
aacatcaaaagtccaaaggagcgattggctcgtcaaaaacaaaaccttcgtcgtcgttta
ggtttggatgcgtgtgagcaattcatagatgttaatgacatgataagagatgaggacctt
attttggacaaggttaacatgtatgataatggtggagataggcagatgtttccatcaaaa
tctatacataatatccagcagtttgtcgctaatatggtcccatatattgtatccaaaagg
cccagtgctcgagaaatgaaccttctgaaacggaaagcaaaaataaactccaaggaccag
acaaaacattggtctgaggaaggagagacagacgtagcaggcacccaactagtggaaaca
ccaaggggcttaggtccggatttattaagttcacaaaagtcagctgtgagtgtaaataat
gatgacgattctggtgatcatgatggtgatggacaatggccttttcataatttcgtcgag
caaattcttcttgatatgtttgattctaattgggaagtccgtcatggtagtgtgatggcc
ctgagagaaattttaacccatcaaggaggttgtgctggagtaattttgtctgacattagc
atagacggtgctccattctccacgttagaagatgaaagcgtgccaaataagttaaagcga
gaaagagatattgatttaaatacacagttgatggaggacgaatttgagtttaaaccgaaa
aggccaaagtttgaagatgcctcatgtccccatgtcaatgtgatggtcagtgctgatgag
gacattaacttaggggtcaatttgaaagttgaaactgatgataggcttatgcctgatgat
cagcctggagttcaatttgaaatttgctctgtaaaggtggaggatcatcccaatggttca
tgctatccgcatgttgatacacccactgccgcggtcgaggagtgccctgatagtaaatta
ccttgtgaggatactactatgctgacaaacttttctgaaaatcgcgagctgaggaatttg
gttaaattgactaggcattcttggctgaaaaattttgaatttcttcaagattgtgcaatt
cgtctgttgtgtattttacttctagatcggtttggagattatgtatccgatcaggttgtt
gctcctgtgcgtgaaacctgcgcccaagcattgggtgcagtgttcaagtacatgcatcct
acattagttaacgaaacattacatatcttgctgcaaatgcagttcaggcaggaatgggaa
attcgtcatgggagtcttttaggcataaagtatttggttgccgtacgaaaggaacttctt
catgatttgctttcacgcattctccctgcgtgtaaagcaggccttgaggaccctgatgat
gatgtccaggctgttgcagcagatgctttaataccggctgctgattctattgtttctctc
aagggtccgaccttgcattcaattgtgatgttgctctgggatatcctgcttgatttggat
gatctaagtccttccaccagcagtgtaatgaatctattagcggaaatctattcccagaaa
gagatgtttccaaacatgtttgaggtgttaaccttaagagagacccaagagtacgatcta
aatgaagctattcgcgtgcatgataccncagagggcatatgtctacaagaaaacccatat
gcattaacatcattggcgccaaggttatggccgtttatgaggcacagtatcacatcagtt
cgttattcagctatacgtactttggaacggctgctagaagcaggattgaaacaaaatatt
tctgtgccttctgctgctatttggccgacgaccattttgggtgacactcttaggattgtg
tttcagaatttgcttttagaatcaaatgatgatattttggaatgttcagagcgggtttgg
aggcttcttctccagtctcaagttaaggagttggaacttgtcgcaagatcatacgcatca
tcgtggatggagcttgcaacaactccatatggttccacgttggacagttcaaaattattt
tggccagtagcccttcccagaaaaagtcattttagggcggctgctaaaatgagagctgta
aaacttgaaaatgagtcttccagcagagtaggcatggagttggcaaaggtaactatttca
catgaaagaaatggagattcttcgtccagtttttctaagatcattgtcggtgctgatgcg
gatatctcagtgactcttacccgagttgtcactgcanacagccttgggattttcgcttcc
aagctgaatgaaggatctttgcaagatgtaatcagttcattatggaatgcatttaaatcc
tcatctggagttcggcggcaggtagcctccattgttcttatttcttggttcaaggagatt
aggaacaaagagaactctataggtcatggagctatttcttgcctgcccaattatttacga
gaatggttgttggatctgttaacgtgctctgatcctgcatttcctacaaaggattcatcg
cttccttacactgaactttcaagaacatattctaagatgcgtggcgaggctacacaatta
gtacgggctattgagtcatctgggttgtttaaggattccttttcaggtactcagattgac
tttgaaaacttgactgctgatgatgcaattaattttgcatcgaaaatttcaacacccaaa
atttcaacacccattggagatattgatgaaaatgggttggagggaaggcaggctattgat
gatatagagtcattgaaacaacgtcttttgacanattcagggtatttgaaatgcgttcag
agtaatttgcatatctcggtctctgcaatggttgctgctgcagttgtttggatgtctgaa
cttccagccagactcaatccaatcattttgcctttgatggcttctataaaaagagagcag
gaggaaatactacaacaaaaagcagcagatgcactagcagagctaatttgtcagtgtgtt
ctacgtaaacctgggccaaatgataagttaataaaaaatatttgtactttgacctgcatg
gacgcttctgaaacacctcaagcggcagttatttgctccatggaggtaatcgatgaacaa
gatattctttcttctgggactaatacgagaaaatcaagaacaaaagttcatgttccgtct
ggtactgatgatcgatcaagaattgagggcttcattagcagacgtgggtctgaacttgtc
ttaaggtgtctctgtgagaagcttggggctgcattatttgagaagcttcctaagctttgg
gattatcttaccgaaatattgttgcctgctactgttgaaaatgttactgctgaagatgaa
cagaaaataatgcacaccattgagtctgtgaaggatcctcagaccttgataaataatatc
caggtggtacgatctcttgctccaatgctcaatgaaatgttgaaaccaagactacttacc
ttgcttccctgcatttttagatgtattcggcactctcatgttgctgttagattagcagct
tctagatgcatcacttccatggccaagtcattgaccacagatgtcatgggagctgtgatt
gtaaacgccattcctatgttagaagatatgaattccgtaaattctagacaaggtgctggc
atgcttattagcttgcttgttcagggaatgggtgtagagctggtgccttatgctccttta
ttggtggttccacttttaaggtgtatgagcgattgtgatcagtctgttagacgatctgtg
acccgcagttttgctgctcttgtgcctcttcttccattagcacgtggtcttccaccacct
tctggactcagtgaagttttctctaaaaataaggaagatgcacaatttctggaacaacta
cttgacaactcccacattgaggactacaaactctgtactgaacttaagatgacattgaga
aggtatcagcaagaagggataaattggttggcattcttaaaacgtttcaaacttcatgga
atcttgtgtgatgatatgggtcttggtaaaacacttcaagcatcagcaattgtggcatgc
gacatagttgaacgccttactttgaatgatagagagaatattccgccatctttaataatt
tgtccatcaacactagttggacactgggcctttgaaatagagaagtatgttgatgtctct
attctttctactctccaatatgttggttcagtacaggagcggacatctcttcgagagtgt
ttcaacaaatataatgtcatcataacgtcgtatcatgtggtgcgtaaggatgttgagtat
ctttcacaatttcacntgaattattgcatattggacgaaggacatattattaggaatgca
aaatccaaaataacccttgctgtaaagcaattgagatcccaaaatcgtctggtactaagt
ggaacccccattcagaataatgtcatggatttgtggtcancttttgattttctaatgcct
ggttttcttggaacagagagacagttccaatcaacttatggaaaaccactactagcagct
agagattccaaatgttctgctagggatgcagaagctggggcactcgccatggaagcattg
cacaagcaggtcatgccttttcttcttcggcgaactaaagatgaagtgctgtctgacctg
ccagaaaaaattattcaagacagattctgtgacttgagccctgtacaactcaaattatat
gaaaggttctctggttctcatgttagacaggaaatatcaagtatggtcaaatcaaatgaa
tcanngaagtaccacaggaaagcagtggttcaacgggcatcctcacatatttttcaggca
ctccagtatttgcttaaactttgtagtcatcctttgcttgttacgggagaaaaaatgtca
gattcgatgaaatgcatcctgacagaactcttacctgacagctctgacattatttctgaa
cttcataaactacaccactctcctaaattagttgctctttcggaaattcttgaggagtgt
ggcattggtgttgatactttgggttctgatggagctgtcagctgtggccagcacagagtc
ttgatatttgcacagcataaagccttattggacattattgaaagagatttattccatgct
cacatgaagaatgttacgtacttgcgactggatggatctgttgagccggagaaacgtttc
gacattgttaaggccttcaattctgatcctacaattgatgtattgctccttacaacacat
gttggcggtcttggtttgaatctgacatctgcagacacccttgttttcatggagcatgat
tggaatccaatgcgtgatcatcaggctatggacagagcccacaggttaggccagcggaag
gttgtaaatgtccatcggctcattatgcgtggaacgctagaagaaaaagttatgagcctt
caaaagtttaaagtttctattgctaatgctgtcatcaattctgagaatgccagtatgaaa
acgatgaataccgatcaattgcttgatcttttcacaactgccgaaacctccaagaaggga
gcggcgtcagcatcatctaagcagtcagatggtgactttgatggagaggtaaaagcaatg
ggtggaaagaagggtctgaaagccatccttggaggacttgaggaactctgggaccaatct
caatacactgaagagtacaatctaaatcagtttttagcaaagcttaatggctga
DBGET
integrated database retrieval system
