Cucumis sativus (cucumber): 116405077
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Entry
116405077 CDS
T02486
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit CG7185-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
csv
Cucumis sativus (cucumber)
Pathway
csv03015
mRNA surveillance pathway
csv03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
csv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116405077
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116405077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csv03019
]
116405077
Messenger RNA biogenesis [BR:
csv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
116405077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
DDHD
Spt20_SEP
Motif
Other DBs
NCBI-GeneID:
116405077
NCBI-ProteinID:
XP_031744554
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All DBs
Position
7:complement(5929689..5934304)
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AA seq
739 aa
AA seq
DB search
MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS
DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP
DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPQQQQQQQQ
QQQQQQQQQQQQQQPQPQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVN
GVGGNGFANIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS
KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN
PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGPMRGRG
GGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP
PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMG
GWGSEEQGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRY
RDDRDVGYDRERSKEKDPGPDHDWPDRRPREDRDIGRERDKERDRDRDRERSRDYERGHH
ERDRERERDRDRDRYKDDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEE
SRSRSRDADYGKRRRLTSE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaggagagggtgggttcggtgagggtgtggatcagattgatcagttccatcgg
aacgaggccatttcggccgttgctgatgatggtttcttgggcgaagatgaggatgaatac
gaggacctgtataacgatgttaatgttggggaggggttccttcagtcgttgaggaagagc
gatgatttgggattcaagagggaggaggaacccaagatggagcctcctgcacctgtacca
cccagttccggtgcttccatacctggtattggtggaggtgcgactgaagttactggttta
ggagatgccggtgggcgtactgtttcggagagagtaacagagggttacaatcagattcca
gatttaagaacgaatgagatggctatcagaggtggggtgggatcggggccgcctgtaggc
accggagttgggatcagagttgaattagggcaagggagcaaagccatcgagttggaggag
cgaagtagtaataacgtagctgggcatcaggctccgcaacagcaacagcaacagcaacag
caacagcaacagcaacagcaacagcaacagcaacagcaacagccacagccacagccgcag
ccgcagccacagccacagccgcagcaccatcaccaaccacctcagagcggagtcttagga
aatcctgggagtgtagaaaatgaaggtttgctaaggcaaggtggtggagttaatgtcaat
ggggttggtggaaacgggttcgctaatatcgggagtgcagggggaggtggcggtggaaca
attttgtttgttggggatttacattggtggactacagatgcggagcttgaggtggaactc
tgtaagtatggtccgttgaaggaggtcaagttttatgacgagaaagccagtggaaaatca
aaaggctactgccaggttgagttttatgattcttctgctgccacagcttgcaaggaggga
atgaatgggcatatttttaatggacgtccctgtgtagttgcatatgcatcaccgtttagt
gttaagaaaatgggagaagcccaagttagcaggaaccaacagatagcccaagctactaat
cctcaagcaaggagagcgcctaatgaggctgtaggtaaaattggtggaaatagtattgca
acgggtggtaactatcaaggtggtgataacaatagaggttctgggagaggtaactgggga
aggagtaatgctcatggaatgggtggtcgaggaccagctggcccaatgaggggtaggggt
ggtgggatgggtggcagaggtataatgggaaatggtggaaatggatttggccaaggaatt
ggtgctacccctcctttattgcatccccagtcaatgatgggtcaaggttttgatccatct
tttggtgcacccatgggaagaatgggtacatatggtggttttcctggagccccagctccc
cctttctctggaattttgtcatcctttcctcctgtcgggggtgttggccttcctggtgta
gctcctcatgtgaacccagcattttttggaagaggtatgcctatgaatggaatggggatg
atgccaacatcgggtgttgatgggcctaatatgggaatgtggtctgatcctagtatgggt
ggatggggcagtgaagagcaaggtggagggagagcaggtgagtctagttatggagaagaa
gctggttctgaccagcattatggtgaaggcagtcatgaaagagggccatgggcaaattct
gcgaaggagaaagatagaggctctgaaagggactggtcacagtcttctgatagaaggtat
cgagatgatagagatgtcggttatgatagagagagatccaaagaaaaagatccgggacct
gaccatgactggccagatagaaggcctcgtgaagatagagatatagggcgtgaaagggat
aaagagagggatcgagatagggatagagaacgatcccgagattatgagcgtggccatcat
gaacgtgatcgtgaacgtgaaagggatcgtgaccgtgataggtacaaggacgacagggac
agatattctgatcatcataggtacagagaccgggaaccagagcatgatgaggattgggaa
aggggacggtcatcaaggactcatagtcatagcaagtcccgtttatcacaagaagaagaa
agccgttcaagatccagggatgctgattatgggaagaggcggaggcttacttcggaatag
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