Cenarchaeum symbiosum: CENSYa_1537
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Entry
CENSYa_1537 CDS
T01380
Name
(GenBank) exosome complex RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
csy
Cenarchaeum symbiosum
Pathway
csy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CENSYa_1537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csy03019
]
CENSYa_1537
Messenger RNA biogenesis [BR:
csy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CENSYa_1537
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CENSYa_1537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
ECR1_N_2
KH_6
RRP4_S1
RRP40_S1
KH-I_KHDC4-BBP
KH_2
ECR1_N
KH_KhpA-B
S1
Motif
Other DBs
NCBI-ProteinID:
ABK78159
UniProt:
A0RXU2
LinkDB
All DBs
Position
complement(1548858..1549535)
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AA seq
225 aa
AA seq
DB search
MDDRKRVMPGDVITTGPYRPEQNTILEGRNIVATVVGVSEIADDAVSVIPLTGMYYPKVG
DLVIGKVTSHSSLAWEVEINSCYVGFLPASDVFGRGFDAQGDELSSKLAKGELVAARVAN
FDRTRDPLVTVAERDLGKIDTGDLVTISPSKVARLIGKRGAMIETIEKATGATVTIGQNG
RVVVSCESPDGLLKAKKAIQMVEEQAHMSNLTDRVRSMLESRDGC
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagaaagagggtcatgcccggggatgtcattaccacagggccgtacaggcct
gaacagaacaccatactcgaaggcaggaacatagtggccacagtagtcggcgtctcggag
atagccgatgacgcagtcagcgtgatcccccttaccggaatgtactatcccaaggtggga
gacctggtaataggcaaagtcacatcccattcatcgcttgcatgggaggtcgagataaac
tcctgctatgtgggatttctgccggcatctgacgtattcgggcgcggctttgacgcacag
ggcgacgagctctcctcaaagctcgcaaagggcgagcttgtagccgcaagggtggcgaac
tttgatcggacgcgcgacccgctggtcacggtagccgagagggatcttggcaagatagac
acgggagacttggtcaccatatcgccgagcaaggtggcccggctgataggaaagcggggc
gcgatgatcgagaccatagaaaaggccacaggcgccaccgttaccataggccagaacggc
agggtggtggtgtcctgcgagagccccgatggcttattaaaggccaaaaaggcgatccag
atggttgaagaacaggcacatatgtcgaacctcactgacagagtcagatcaatgttagaa
tcacgggatggatgttaa
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