Carlito syrichta (Philippine tarsier): 103249421
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Entry
103249421 CDS
T07836
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csyr
Carlito syrichta (Philippine tarsier)
Pathway
csyr03013
Nucleocytoplasmic transport
csyr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csyr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103249421 (UPF1)
03015 mRNA surveillance pathway
103249421 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csyr03019
]
103249421 (UPF1)
Enzymes [BR:
csyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103249421 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103249421 (UPF1)
Messenger RNA biogenesis [BR:
csyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103249421 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103249421 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103249421
NCBI-ProteinID:
XP_021563227
Ensembl:
ENSTSYG00000008877
UniProt:
A0A3Q0DLF8
LinkDB
All DBs
Position
Unknown
AA seq
1079 aa
AA seq
DB search
MSECDASLPQAFVLRVRKHAGLAALLRAPGVWAPWDPDVGPEGILQNGAVDDSVAKTSQL
LAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNH
LVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSL
KDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLED
LEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNK
KRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVIKVPDNYGDEIAIELRSSV
GAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQL
PKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLV
CAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQ
LKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDEST
QATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQ
VQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIAS
SGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQ
EVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKAL
SKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDARE
AIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFG
QANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQAALTQGYI
SMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagtgcgatgcatcactacctcaggcctttgtgcttcgggtgaggaagcatgct
ggtttagcggcgctgttgagggcccctggggtgtgggctccgtgggaccccgatgttgga
cctgagggcatcctgcagaacggggctgtggacgacagtgtggccaagaccagccagttg
ttggctgagttgaactttgaagaagatgaggaagatacgtattacaccaaggatctcccc
atccatgcgtgcagttactgtggaatacatgatcctgcctgcgtggtttactgtaacacc
agcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
ctggtgagggcaaaatgcaaagaggtgaccctgcacaaggacgggcccctgggagagacg
gtcctggagtgctacaactgcggctgtcgcaacgtcttcctgcttggcttcatcccggcc
aaggccgactcggtggtggtgctgctgtgcaggcagccctgcgccagccagagcagcctc
aaggacatcaactgggacagctcgcaatggcaaccgctgatccaggatcgctgcttcctg
tcttggctggtcaagatcccatctgagcaggagcagctgcgggcgcgccagatcacggcc
cagcagatcaacaagctggaggagctctggaaggaaaacccttctgccaccctggaggac
ctggagaagccgggggtggatgaggagccgcagcacgtgctcctgcggtatgaggatgcc
taccagtaccagaacatctttgggcccctggtcaagctggaggctgactacgacaagaag
ctgaaggagtctcagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctgacatgcggctcatgcagggc
gatgagatttgcctgcggtacaagggggaccttgcgcccccatggaaagggatcggccat
gtcatcaaggtccctgataattatggtgacgagatcgccattgagctgcgaagcagtgtg
ggtgcccctgtggaggtgactcacaatttccaggtggactttgtgtggaagtcgacctcg
tttgacaggatgcagagtgctctgaagacgttcgccgtggatgagacctcggtgtctggc
tacatctaccacaagctgcttggccacgaggtggaggatgtgatcatcaagtgccagctg
cccaagcgcttcacagcgcaagggctccctgacctcaatcactctcaggtttatgcggtg
aagactgtgctgcagagaccgctgagcctgatccagggcccaccgggcacagggaagaca
gtgacctcggccaccatcgtctaccacctggctcggcagggcaatgggcctgtgcttgtc
tgtgctcccagcaacattgctgtggaccagctgaccgagaagatccaccagacagggctg
aaggttgtgcgcctttgcgccaagagccgtgaggccattgactccccagtgtccttcctg
gccttgcacaaccagatccggaacatggacagcatgcccgagctgcagaagctacagcag
ctgaaggatgagactggggaactgtcgtctgctgatgagaagcggtatcgggccctgaag
cgcacagccgagagggagctactcatgaatgcagatgtcatctgctgcacatgcgtgggt
gccggtgacccaaggcttgccaagatgcaattccgctccatcttaattgatgagagcacc
caggccactgagccggagtgtatggttcctgtggtcctcggggccaagcagctgatcctc
gtgggtgatcactgccagctgggcccggtggtgatgtgcaagaaggcggccaaggccggg
ctgtcacagtcgctcttcgagcgcctggtggtgctgggcatccggcccatccgtctccag
gtccagtaccgaatgcaccctgcactcagcgccttcccgtccaacatcttctatgagggc
tcgctgcagaacggtgtcaccgcagcggatcgtgtgaagaagggctttgacttccagtgg
ccccagcccgacaaaccaatgttcttctatgtgacccagggccaggaggagattgccagc
tcgggcacttcctacctgaacaggacggaggctgccaacgtggagaagatcaccacaaag
ctgctgaaggcaggtgccaagccagaccagattggcatcatcacaccctatgagggccag
cgctcctacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccag
gaggtggagattgccagcgtggacgccttccaggggcgcgagaaggacttcatcattctc
tcctgcgtgcgggccaatgagcatcagggcattgggtttctaaatgacccaagacgtctt
aacgtggccttgacccgagcaaggtatggtgtcatcattgtgggcaaccccaaggcgctg
tcgaagcagccattgtggaaccacttgctgaactactacaaggagcagaaggtgctggtg
gagggccccctcaacaacctacgtgagagcctcatgcagttcagcaagccacgcaagctc
gtcaacaccatcaacccgggagcccgcttcatgacaacagccatgtatgacgcccgggag
gccatcatcccaggctcggtttacgaccgaagcagtcagggccggccctcaaatatgtac
ttccagacccacgaccagattggcatgatcagcgccggccccagccacgtggctgccatg
aacattcccatccccttcaacctggtcatgccacccatgccaccacccggctactttgga
caagccaacgggcccgctgcaggccggggcaccccaaaaggtaagactgggcgtggggga
cgccagaagaaccgatttgggcttcctgggcccagccagaccaacctgcccagcagccag
gccagccaggacgtggcgtcgcagcccttctcacaggctgctctgacacagggctacatt
tccatgagccagccttcccagatgagccagcctggcctctcccagccagaactgtcccag
gacagttaccttggtgatgagtttaaatcacagatcgacgtggccctgtcacaagactcc
acataccagggagagcgggcgtaccagcacggcggggtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
