Carlito syrichta (Philippine tarsier): 103252069
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Entry
103252069 CDS
T07836
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
csyr
Carlito syrichta (Philippine tarsier)
Pathway
csyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103252069 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csyr03041
]
103252069 (DDX42)
Enzymes [BR:
csyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103252069 (DDX42)
Spliceosome [BR:
csyr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103252069 (DDX42)
Complex B
103252069 (DDX42)
Complex C
U2 SnRNP specific factors
103252069 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103252069
NCBI-ProteinID:
XP_008048858
Ensembl:
ENSTSYG00000001380
UniProt:
A0A1U7SXH3
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGAPSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDASNVDLPYIPAENSPTRQQFHSKPVDSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLTNQK
AGSSAAGASGWTSAGSLNSVPTSSAQQGQSSPDSPIASAAKGIPSFSSTGNISAAPVTYP
SAGAQGVNNNAASGNNSREGIGGGNGKRERYTENRGGSRHSHGESGSRHGDSPRHGDGGR
HGDGYRYLEGSSRHTDGHRHGENRHGGNAGRHGDSRGASDGRNGESRKEGCNREKTDPKV
DSGKVDKADSKTEKPADGFAIPEPPKRKKSRWDS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagcggggatttggctttggaggttttgcc
atcagtgctggtaagaaggaagaacccaaacttccccagcagtcccacagtgcctttggg
gcacccagctcttcttctgggtttggaaagtcagctccaccacagctcccttctttctac
aaaattggatctaaacgggccaactttgatgaagaaaatgcatattttgaagatgaagaa
gaggacgctagcaatgttgatttgccttacattcccgcagaaaactcaccaacccgccag
caattccattccaagccagtagattctgacagtgatgatgatcccttggaggcattcatg
gctgaagtggaggatcaggcagctagagatatgaagagactggaagacaaagacaaggaa
agaaaaaatgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggcagagaatccaacggctggtgtggttcaggaggaagaggaagacaac
ctggaatacgacagtgatggaaatcccattgcgccttccaaaaagatcatcgatcctctt
cctcccattgatcactcagaaattgactatccaccatttgaaaaaaatttttacaatgag
catgaagagataaccaacctcactccacagcagttaatagatctccggcataagctcaat
cttcgggtctctggcgcggcaccccctagaccaggaagtagctttgctcattttgggttt
gatgaacaacttatgcaccagattcgaaaatctgagtacacacagcccactccaatacaa
tgccagggtgtacctgtggcattaagtggcagagacatgattggtattgccaaaacaggc
agtgggaaaactgcagcctttatctggcccatgttgattcatataatggatcagaaggag
ctagaaccaggtgatggaccaattgcagtgattgtgtgtcctaccagggagctttgccag
cagatccatgcagaatgtaagcggtttggaaaagcatataatcttcgatcagtggccgtg
tatggtggagggagcatgtgggagcaggccaaggcccttcaggaaggagcagagattgtt
gtgtgtactccaggtcgactgattgatcatgtgaaaaagaaagccaccaatcttcaaaga
gtctcttaccttgtatttgatgaagcagatcgaatgtttgacatgggatttgagtaccag
gttcgatccatagcaagtcatgttcgtcctgacagacagactctcttattcagtgcaact
tttcggaagaagattgaaaagttggccagagacatcctgatcgaccctattcgagtggtg
cagggagatattggcgaggcaaacgaagatgtgacacagattgtggagattctccattcc
gggcctagtaaatggaactggcttactcggcgtttggtggagtttacctcttctgggagt
gtcctcctgtttgttactaaaaaagccaatgctgaagagctagccagtaaccttaagcag
gagggccataaccttggactgcttcatggggacatggatcagagtgagagaaacaaggtc
atttctgactttaagaaaaaggacatccccgtcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtaattaactatgatgtggcacgagacattgat
acccatactcatagaattggccgcacgggaagagcaggtgagaagggtgtggcctatacc
ctactgactcccaaggacagcaattttgctggtgaccttgtccggaatttggaaggagcc
aatcagcatgtttccaaggaacttctagacctggcaatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaagggaaaaagctaaacattggtggtggaggcctgggctac
agggagcgacctggcctgggctctgagaacacggaccgaggaaataataatgtcatgagt
aattatgaggcttacaagccatccacgggagccatgggggatcgactgacggccatgaaa
gcagctttccagtcacagtacaagagtcactttgttgcggccagtttaactaatcagaag
gctggaagctctgctgctggggcaagcggatggactagtgcggggagcttgaattctgtt
ccgactagttcagcacagcagggtcagagcagccccgacagtcccatcgccagtgccgcc
aagggcatcccaagctttagcagtactgggaacatcagcgctgcccctgtgacctaccct
tctgctggagcccagggagtcaacaacaatgcagcttcagggaataacagccgagaaggc
attgggggaggcaatgggaagagagagagatacactgagaaccggggtggcagccgtcac
agtcacggcgagagtggcagtcggcatggcgatagcccacgtcacggagatggtgggcgc
cacggggatggataccgctacctggaaggcagcagccgtcacactgatggccatcggcat
ggggaaaaccggcatggaggaaacgcaggcaggcatggggatagccggggtgcaagcgat
ggtcggaacggggaaagcaggaaagaaggttgtaatcgtgagaagacggaccccaaggtg
gacagtggcaaagtggacaaggcagacagcaagacagaaaagccggccgatggctttgct
atcccagaaccgcccaaacgcaagaagagtcggtgggacagttag
DBGET
integrated database retrieval system
