Carlito syrichta (Philippine tarsier): 103257742
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Entry
103257742 CDS
T07836
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
csyr
Carlito syrichta (Philippine tarsier)
Brite
KEGG Orthology (KO) [BR:
csyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csyr03016
]
103257742 (RTCB)
Enzymes [BR:
csyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
103257742 (RTCB)
Transfer RNA biogenesis [BR:
csyr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103257742 (RTCB)
Prokaryotic type
tRNA splicing ligases
103257742 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
103257742
NCBI-ProteinID:
XP_008053632
Ensembl:
ENSTSYG00000012320
UniProt:
A0A1U7TKW8
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLDKIDKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPDAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaactataacgatgagctacagttcctggataagatcgataaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgagggagttttctatgtgaatgat
gctctggagaagttaatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaagcagattggcaatgtggcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccattcaggctatgggtttgctattgggaacatggcg
gcctttgatatgaatgaccctgacgcagtggtatccccaggtggtgtcggatttgacatc
aactgtggtgtccgcttgctgagaaccaatttagatgaaagtgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgaccacattcctgtgggagtgggatcaaaaggggtc
atcccaatgaatgccaaagacttggaagaggccttggagatgggtgtggattggtccctg
agagaaggctatgcctgggctgaagacaaggagcactgtgaggagtatggaaggatgctg
caagctgacccaaacaaggtctctgcgagggctaaaaaaagaggccttcctcagttgggg
actctgggagcaggcaaccactatgcagaaatccaggttgtggacgagattttcaatgag
tatgcagccaagaaaatgggcattgaccataaaggacaagtctgtgtgatgatccacagt
ggaagcagaggcttgggccaccaagttgccacagatgcactggtagctatggaaaaggcc
atgaagagagacaagattatagtcaatgaccgtcagttggcttgtgcacgaattgcttcc
ccagagggtcaggactacctgaaaggaatggcagcagctggaaactatgcctgggtcaac
cgttcttccatgaccttcttaacccgacaggcttttgctaaagtcttcaacacaacccct
gatgacttggacctacacgtaatctatgatgtttctcacaatattgccaaagtagagcag
cacgtggtggatggaaaggagcgaacgctgttagtgcacaggaagggatccacccgcgct
ttccctcctcaccatcccctcattgctgttgattaccagctcactggacaaccagtgctt
atcggtggcaccatgggaacctgtagttatgttcttactggcactgaacagggcatgact
gagacttttggaacaacctgtcatggagcgggccgtgcattgtcccgagcaaaatctcga
cgtaatttagatttccaggatgtcttagacaaattggcagatatgggaattgcaatccgt
gttgcttcacccaaactggttatggaagaggctcctgagtcctataagaacgtgacagat
gtggtgaatacctgtcatgatgctggaatcagcaagaaggccattaaactgagaccaatt
gctgttatcaaaggttag
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