Carlito syrichta (Philippine tarsier): 103268237
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Entry
103268237 CDS
T07836
Symbol
SKIV2L2
Name
(RefSeq) superkiller viralicidic activity 2-like 2 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
csyr
Carlito syrichta (Philippine tarsier)
Pathway
csyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103268237 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csyr03019
]
103268237 (SKIV2L2)
03041 Spliceosome [BR:
csyr03041
]
103268237 (SKIV2L2)
03009 Ribosome biogenesis [BR:
csyr03009
]
103268237 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
csyr03016
]
103268237 (SKIV2L2)
Enzymes [BR:
csyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103268237 (SKIV2L2)
Messenger RNA biogenesis [BR:
csyr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
103268237 (SKIV2L2)
Spliceosome [BR:
csyr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103268237 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
103268237 (SKIV2L2)
Ribosome biogenesis [BR:
csyr03009
]
Eukaryotic type
Pre-60S particles
Helicases
103268237 (SKIV2L2)
Transfer RNA biogenesis [BR:
csyr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
103268237 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
103268237
NCBI-ProteinID:
XP_021572063
Ensembl:
ENSTSYG00000007389
UniProt:
A0A3Q0EDD1
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDRTAADGPKKENEKEKGKWKGPPGSADKAGKRFDGKLQSESTNSG
KNKRDVDFEGTDEPIFGKKPRIEESITEDLSLTDLMPRVKVQSVETVEGCTHEVALPADE
EYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVLKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcattcggggatgagctgttcagcgtgttcgaggacgacaggaccgctgcg
gacgggcccaaaaaagagaatgaaaaggagaaagggaaatggaagggacctccggggtct
gcggacaaggctgggaaacgttttgatggcaaattacaatcagaatcaactaatagtgga
aaaaataagagagatgtagactttgaaggcacagatgagcccatttttggaaagaagcct
aggatagaagagtcaataactgaagacttaagtttgacagacctgatgcctagagtcaag
gtacagtcagttgagactgttgaagggtgtacacatgaggttgcgcttcctgcagatgaa
gagtatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcctttcaaagagaagccattcagtgtgttgataataaccagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgtgctgagtatgccattgcattggctttaagg
gaaaaacagcgtgtaatatttaccagtccaattaaggctcttagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctaatgactggagatgttactattaatcct
acagcatcttgtcttgttatgacaacagagattttgagaagcatgctgtacaggggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtagtatgggaagaaacaattattttgcttcctgataatgtccactatgtt
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtaatttacacagattatcgacccactccattgcaacactatatt
tttccagcaggcggagatggcctgcaccttgtggttgatgaaaatggtgatttcagagaa
gataattttaatactgcaatgcaagtgcttcgagatgcaggtgatttggcaaaaggagat
cagaaggggcgaaaagggggaacaaaaggaccatcaaatgttttcaaaattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcttatgcacttcagatgaccaaattagatttcaacacagatgaagaaaaaaagatggtt
gaggaagtattcagtaatgcaattgattgcttgtctgatgaagacaaaaaactccctcag
gtggaacatgtacttcctcttttaaagcgagggattggtattcatcacggtggtttactt
cctattttgaaagaaactatagaaattctcttttcagaaggattgataaaggccttattt
gctacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgcaaatttgatgggaaggattttcgatggatttcttctggtgaatacattcagatg
tctggtcgtgccggaaggaggggcatggatgatagaggaattgtaattcttatggtagat
gaaaaaatgagcccaacaattgggaaacaattgcttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttctaccagtttcagcattatagagcaattccagga
gtagtagaaaaggttaaaaactcagaagaacagtataataaaatagtaattcccaatgaa
gaaagcgtcgtcatctattataagattagacagcagcttgccaaactaggtaaagaaatt
gaagaatatattcacaagccaaaatattgcttgccatttctccaaccaggccgtttggta
aaggtaaagaatgaaggagatgactttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctctatatgtagtagaagtacttctg
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgagaaaggagagatgcaggttgtcccagttttggtgcatctcctgtctgcgatcagc
agtgttaggctttacattcctaaagaccttcggccggtggacaataggcagagtgtttta
aaatcaatacaggaagttctgaaacgttttcctgatggcgttcccttattagatcctatt
gatgatatgggcattcaagatcaagggctgaaaaaagtcattcagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaaacgagagctgaag
aaagcaagaacagtcctacaaatggatgaactcaaatgtcgcaaacgtgttttaagaagg
ttgggatttgctacatcttctgatgtaatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgaactccttctaactgagatgatgtttaatggccttttcaatgacctt
tctgcagaacaagcaacggcattattgagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagaacaattagcaggaccccttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaagaaacatatctaagc
tcattcaagcctcacttaatggatgtagtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaattgcttcgacagatgtgtcaggcagcaaaagccattggaaacactgaactggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttgtga
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