Carlito syrichta (Philippine tarsier): 103270145
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Entry
103270145 CDS
T07836
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csyr
Carlito syrichta (Philippine tarsier)
Pathway
csyr03013
Nucleocytoplasmic transport
csyr03015
mRNA surveillance pathway
csyr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csyr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103270145 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
103270145 (DDX39B)
03015 mRNA surveillance pathway
103270145 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csyr03019
]
103270145 (DDX39B)
03041 Spliceosome [BR:
csyr03041
]
103270145 (DDX39B)
Enzymes [BR:
csyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103270145 (DDX39B)
Messenger RNA biogenesis [BR:
csyr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103270145 (DDX39B)
Spliceosome [BR:
csyr03041
]
Complex C
Other components
EJC/TREX
103270145 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103270145 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103270145
NCBI-ProteinID:
XP_008065870
Ensembl:
ENSTSYG00000010226
UniProt:
A0A1U7U701
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MFVIFIKQQGITSDFCSISKRDRHFPKAIPGARGFVERRKVPLPALCACALAVEKAGGRE
PEVKADSLLRRCCCRHTRSPCLALLSETSIFCCSSNSPSSPLFSPILGEPIQDPLTFPPL
AGPVMAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPEL
LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSV
LVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI
LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR
PVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKS
VQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD
EIDISSYIEQTR
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtcatttttattaagcagcagggcatcacgtctgacttctgcagcatctcaaag
agggacaggcactttccaaaggcaattcccggagcgcgcggctttgtagaacggcggaag
gtcccgcttccggccctttgcgcctgcgctctggcagtcgagaaggcgggaggccgggaa
ccggaagtgaaggcagattccctccttcgtcgctgttgctgccgccatacgcgctcgccc
tgcctagctcttctatcagaaaccagtatcttttgttgttcatcaaactctccctcttcc
cccttgttttcacctattctgggagaacccattcaggacccccttacctttccccccctg
gccggcccagttatggcagagaacgatgtggacaatgagcttttggactatgaagacgat
gaggtggaaacagcagctgggggagatggggctgaggcccctgccaaaaaggatgtcaag
ggctcctatgtctccatccacagctctggctttcgtgacttcctgctcaaaccagagttg
ctccgggccattgttgactgtggctttgagcatccatcagaagtccagcatgagtgcatc
cctcaggccattctgggaatggatgtcctgtgtcaggccaagtcaggcatggggaaaaca
gcagtatttgtgctggccacattgcaacagctggagccagttactgggcaggtgtctgtg
ctggtgatgtgtcatactcgggagctggcttttcagattagcaaggaatatgagcgcttc
tctaaatatatgcccaatgtgaaggttgctgtgttttttggtggtctgtctatcaagaaa
gatgaagaggtgctgaagaagaactgcccgcatatcgtcgtggggactcctggccggatc
ctagccctggctcgaaataagagcctcaacctcaaacacattaaacactttattttggat
gaatgtgataagatgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgc
atgaccccccacgagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgt
ccagtctgccgcaagttcatgcaagatccaatggagatcttcgtggatgatgagacgaag
ttgacgctgcatgggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccgg
aagctctttgaccttctggatgttcttgagttcaaccaggtggtgatttttgtgaagtct
gtgcagcggtgcattgccctggcccagcttctggtggagcagaacttcccagccattgcc
atccaccgtgggatgccccaggaggagaggctttctcggtatcagcagtttaaagatttc
caacgacgaattcttgtggctaccaacctatttggccgaggcatggacattgaacgggtg
aacattgcctttaactatgacatgcctgaggattctgacacatacctgcatcgggtggcc
agagcaggccggttcggtactaagggcttggccatcacgtttgtgtcagatgagaatgac
gccaagatcctcaatgatgtgcaggatcgctttgaggtcaatattagtgagctgcctgat
gagatagacatctcctcctacattgaacagacacggtag
DBGET
integrated database retrieval system
