Cronobacter sakazakii Sp291: CSSP291_00840
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Entry
CSSP291_00840 CDS
T02461
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
csz
Cronobacter sakazakii Sp291
Pathway
csz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSSP291_00840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csz03019
]
CSSP291_00840
03016 Transfer RNA biogenesis [BR:
csz03016
]
CSSP291_00840
Enzymes [BR:
csz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CSSP291_00840
Messenger RNA biogenesis [BR:
csz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CSSP291_00840
Transfer RNA biogenesis [BR:
csz03016
]
Prokaryotic type
tRNA degradation factors
CSSP291_00840
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AGE84768
LinkDB
All DBs
Position
167269..169734
Genome browser
AA seq
821 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELASELGIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLQKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDIVLAQPLGSDRKGRREARIVRVLVPKQSNIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGYVVVVELTQRPTRRTKAIGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIAHLKEEVPEEAKVGRVDLRNLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDEDLRSQYQPLVKHLEELHTLYKALEEA
RTERGGISFESEEAKFIFNAERRIDRIEQTQRNDAHKLIEECMILANISAARFVEKHKEP
ALFRIHDRPTNEAITSFRSVLAELGLELPGGNKPEPRDYAELLDSIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLIAKEQGHEGNTTESG
GWHYTMEEMLQLGQHCSMTERRADEATREVADWLKCDFMQDQVGQTFSGVISSVTGFGFF
VRLTDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREREKRGGGAKNRSRRQVGKRQNFEPNEAFRSEKGRGKVKKD
GAARAEKSDKPAKSSKKPSAKTQKIAAATKAKRAAKKKRDN
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatccttttcaggaacgagaagctgaaaagtacgccaaccccatcccgagc
cgggaattcatccttgaacatttaaccaaacgtgaaaaaccggctaaccgcgatgaactg
gcgtccgaactcggcattgaaggcgaggaacagctggaagcgctgcgtcgccgcctgcga
gctatggagcgcgacggccagttagtctttacccgccgccagtgctatgcgctgccggaa
cgtcttgatctgcaaaaaggcaccgtcatcggccatcgcgacggttacggctttttacgc
gtcgaaggacgcaaagacgatctctatctctcgtctgagcagatgaaaacctgcattcac
ggcgatatcgtgctggcgcagccgctcggttcagaccgcaaaggccgccgcgaagcgcgt
atcgtgcgcgtgctggtgccgaagcagagcaatatcgtcgggcgctatttcaccgacgcg
ggcgtcggctttgtggtgccggacgacagccgcctgagctttgatatcctcattccgccg
gaagaggtgatgggcgcgcgcatgggctatgtcgtggtcgtcgagctgacacagcgtccg
acgcggcgcaccaaagctatcggtaaaattgtcgaagtgctcggcgacaacatgggcacc
ggcatggccgtcgatatggcgctgcgcacccatgaaatcccttacgtctggccgaaagcc
gtcgaagaacagattgcgcacctgaaagaagaagtgccggaagaggccaaagtggggcgc
gtcgatttgcgcaacctgccgctcgtcaccatcgacggcgaagacgcccgcgactttgac
gacgccgtattctgtgagaaaaaacgcggcggcggctggcgcctgtgggtggctatcgcc
gacgtcagctactatgtacgtccgccaacgccgcttgataacgaagcgcgcaaccgcggc
acgtcggtttacttcccgtcgcaggttgtcccgatgctgccggaagtgctctccaacggc
ctgtgttcgctgaatccgcaggtggatcgcctctgtatggtctgtgagatgacgatctcc
gccaaaggccgtctcactggctataaattctatgaagcggtgatgagctcgcacgcccgt
ctgacctacaccaaggtgtggcatattctgcagggcgatgaagatctgcgcagccagtat
caaccgctggtgaagcatcttgaagagctgcacacgctgtataaagcgctggaagaggcg
cgcaccgagcgcggcggtatctcgtttgagagcgaagaggcgaagttcatcttcaacgcc
gagcgccgtatcgatcgcattgagcagacccagcgtaacgacgcgcacaagcttatcgaa
gagtgcatgatcctcgccaacatttcggcggcgcgctttgtcgagaagcacaaagagccg
gcgctgttccgtattcacgatcgcccgacgaatgaagcgatcacctcgttccgctctgta
ctggcggagctggggctggagctgccgggcggcaacaagccggaaccgcgcgactacgcc
gagctgctcgattccatcgccgatcgtcccgatcacgagatgctgcaaaccatgctgctg
cgctcgatgaagcaggcgatttacgatccggaaaaccgcggccactttggcctcgcgctg
caatcctacgcgcactttacctcgccgattcgccgctacccggatctcacgctgcaccgc
gcgattaaatacctgatcgccaaagagcagggccacgaaggcaacaccaccgaaagcggt
ggctggcactacaccatggaagagatgctgcaactgggccagcactgttccatgacggaa
cgccgcgccgacgaagccacccgtgaagtagcggactggctgaagtgcgacttcatgcag
gatcaggtcggccagaccttctccggcgtgatctcaagcgtcaccggctttggtttcttc
gtgcgcctgaccgatctctttatcgatggcctggtgcatgtctcgtcgctggataacgac
tactaccgctttgatcaggtcggtcagcggttgattggcgaatccggcggccagacgtac
cgtctgggcgaccgcgtcgaagttaaagtcgaagcggttaacatggacgagcgcaaaatc
gatttctcgctcatctccagcgaacgcgggccacgtaacgtggggaaaaccgcgcgcgag
cgcgagaagcgaggcggcggcgctaaaaaccgcagccgtcgtcaggtcggcaaacgtcag
aatttcgaacctaacgaggcatttcgcagtgagaaaggccgtggaaaggtgaagaaagac
ggcgcggcgcgggcagagaagagcgacaaaccggcgaaaagcagtaaaaaaccgtcggcc
aaaacgcagaaaatcgcggccgccaccaaagcgaagcgcgcggcgaagaaaaagcgcgac
aactaa
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