Cronobacter sakazakii Sp291: CSSP291_10550
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Entry
CSSP291_10550 CDS
T02461
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csz
Cronobacter sakazakii Sp291
Pathway
csz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CSSP291_10550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csz03400
]
CSSP291_10550
Enzymes [BR:
csz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSSP291_10550
DNA repair and recombination proteins [BR:
csz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CSSP291_10550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGE86695
LinkDB
All DBs
Position
2191259..2194705
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQYRYSLPVKAGDQRQLGELTGAACAVEVAEMAERHAGPLVLIAPDMQTALRLHDEIQ
QFTESLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPGMQRGVLILPVNTLMQRVCPH
SFLHGHALVMQKGQQLSRDTLRAQLDQAGYRHVDQVMAHGEYATRGALLDLYPMGSEQPY
RIDFFDDEIDSLRLFDVDTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDRFEVKRD
PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPKNTLVVSTGDLEASADRFWADAV
ARFENRGVDPMRPLLPPEALWLRTDELHAQLKAWPRVQLKTEALADKAANTNLGYQPLPD
IAVQAQQKSPLDSLRRFLESFTGPVIFSVESEGRREALSELLSRIKVMPKRLLRLEDAQA
GERYLSIGASERGFIDTLRQRAFICESDLLGERVTRRRQESRRTINPDTLIRNLAELRPG
QPVVHLEHGVGRYAGLTTLEAGGITAEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSKARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHDKEQYQLFCEGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIELLSRFRSAKEQAQVLEQAAEGKVDILIGTHKLLQSDVKM
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAAERLANLVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPEAFIPDV
NTRLSFYKRIASAKKEQELEEIKVELIDRFGLLPDPARNLLDIAALRQQAQKLGVRKIEA
NEKGGTIEFAEKNHVDPGWLIGLLQKEPQHYRLDGPTRLKFFRELEERKTRMEWVRQFMA
QLAEHSLP
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgttactctctgcccgtcaaagcgggcgatcagcgtcaactgggt
gaactgaccggcgcggcctgcgccgttgaggtggcggaaatggcggaacgccatgccggc
ccgctggtgcttatcgcgccggatatgcaaaccgccctgcgtctgcacgatgaaattcaa
caatttaccgaaagcctggtgatgaacctggctgactgggagacgctgccgtatgacagc
ttctcgccgcatcaggagattatctcctcgcgcctgtcgacgctctatcagctgcctggc
atgcagcgcggcgtgcttatcctgccggtgaatacgctgatgcagcgcgtctgtccgcac
agcttcctgcacggtcacgcgctggtgatgcaaaaaggccagcagctctcgcgcgacacc
ctgcgcgcgcagctggaccaggcgggctatcgccatgtggatcaggtgatggcgcatggc
gaatatgccacccgcggcgcgctgctcgatctctacccgatgggcagcgaacaaccctac
cgcatcgactttttcgacgacgaaatcgacagcctgcggctgtttgacgtcgatacccag
cgcacgctggaagaggttgaggcgattaacctgctgccggcgcacgaattcccgaccgac
aaagcggccattgagctgttccgcagccagtggcgcgaccgtttcgaggtcaagcgtgac
ccggagcatatctaccagcaggtgagcaaaggcaccctgcccgcgggtattgaatactgg
cagccgctgttctttagcgagccgctgccgccgctgttcagctatttcccgaagaacacc
ctggtggtgagcacgggcgatctggaagcgagcgccgaccgcttctgggccgatgccgtg
gcgcgctttgagaaccgcggcgtcgacccaatgcgtccgctgttgccgccggaagcgctc
tggctgcgcaccgatgaacttcatgcgcagttaaaagcctggccgcgcgtgcagctgaaa
accgaggcgctggctgacaaagccgccaataccaatctgggctaccagccgctgccggat
atcgccgtgcaggcgcagcagaaatcgccgctcgacagtctgcgccgttttctggagtcg
ttcaccggcccggtgattttctcggtggaaagtgaaggccgccgcgaggcgctttcggaa
ctcctttcgcgcattaaagttatgccgaaacgccttctgcggcttgaagacgcacaggcg
ggtgagcgctatctgagcatcggcgcgtccgagcgcggatttatcgataccctgcgccag
cgcgcgtttatttgcgagagcgatctgcttggcgagcgcgtcacgcgccgtcgccaggag
agccgccgcaccatcaacccggatacgctcatccgcaacctggcggagctgcgccccggc
cagccggtggtgcatctggagcatggcgtgggccgctacgcggggctgacgacgcttgaa
gcgggcggcatcacggcggaatacctgatgctcacctatgccaacgatgcgaagctctat
gtgccagtgtcgtcgctgcatctcatcagccgctacgcaggcggtgccgaagagaacgcg
ccgctgcacaagcttggcggcgacgcgtggtcgaaagcgcgccagaaagcggcggaaaaa
gtgcgcgatgtggcggcggagctgctggatatctacgcccagcgcgccgcgaaatccggt
ttcgcctttaagcatgacaaagagcagtatcagctcttctgcgaagggttcccgtttgag
actacgcccgatcaggcgcaggcgattaacgcggtgctgagcgacatgtgccagccgctg
gcgatggatcgtctggtgtgcggcgacgtgggcttcggtaaaaccgaagtggctatgcgc
gcggcgttcctggcggtcgagaacaataaacaggtggcggtgctggtgccgaccacgctt
ctggcgcagcagcattacgacaacttccgcgatcgcttcgccaactggccggtgcgcatt
gagttactgtcgcgctttcgcagcgccaaagagcaggcgcaggtgctggaacaggccgct
gaaggcaaagtcgatattcttatcggcactcacaagctgttgcagagcgacgtcaaaatg
aaagatctcggtcttttgatcgtcgatgaagaacaccgcttcggggtgcgtcacaaagag
cgtattaaagcgatgcgcgccgatgtggatattctgacgctcaccgcgacgcctattccg
cgcacgctgaacatggcgatgagcggcatgcgtgacctgtcgattatcgccacgccgccc
gcgcgtcgtctggcggtgaaaaccttcgtgcgcgagtatgacaatctggtcgtgcgcgag
gccatcctgcgtgaagtgctgcgcggcggtcaggtctattacctctacaatgatgtcgag
aatatccagaaggccgccgagcggctggcgaatctggtgccggaggcgcgcatcgccatc
ggtcacggccagatgcgcgagcgcgagcttgagcgggtgatgaacgatttccatcatcag
cgctttaacgtgctggtgtgtaccacgatcattgaaaccggtatcgatattccgaccgcc
aataccattatcatcgagcgcgccgatcattttggtctcgcccagctgcaccagctgcgc
ggccgcgtcgggcgatcgcatcatcaggcgtatgcgtggctgctgacgccgccgccgaag
gcgatgaccaccgacgcgcaaaagcgtcttgaggcgatcgcgtcgctggaagatctcggc
gcgggctttgcgctcgcgacgcacgatctggagattcgcggcgcgggcgagctgctgggc
gaagatcagagcggccagatggaaaccatcggcttctccctctatatggagcttctggaa
aacgcggtggacgcgctgaaagccgggcgcgagccgtcgcttgaagatctcaccagtcag
cagacggaagtggaactgcggatgccatcgctactgccggaggcgtttatcccggatgtg
aacacgcgcctgtcgttctataagcgcatcgccagcgccaaaaaagagcaggagcttgaa
gagatcaaagtggagcttatcgaccgctttggcctgctgccggacccggcacgcaatctg
ctggatatcgcggccctgcgccagcaggcgcagaagcttggcgtgcgtaaaattgaggct
aacgagaaaggcggcaccattgagtttgccgagaaaaatcatgtcgatccgggctggctt
atcggcctgctgcaaaaagagccacagcattaccgccttgacgggccgacgcgcctgaaa
tttttccgcgagctggaagagcggaaaacccgaatggaatgggtgcgtcagtttatggcg
caactcgccgaacactcgctgccttaa
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integrated database retrieval system
