Clostridium taeniosporum: BGI42_00650
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Entry
BGI42_00650 CDS
T04957
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctae
Clostridium taeniosporum
Pathway
ctae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BGI42_00650 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctae03400
]
BGI42_00650 (mfd)
Enzymes [BR:
ctae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BGI42_00650 (mfd)
DNA repair and recombination proteins [BR:
ctae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BGI42_00650 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AOR22336
UniProt:
A0A1D7XG59
LinkDB
All DBs
Position
152490..155993
Genome browser
AA seq
1167 aa
AA seq
DB search
MRLKGLLEPLENGIELKNILQAIEENTYPIGVYGLSDSGKSYMIDGLFENIKRSIVIVTQ
NDMEAKNLYEDLILYTNEVYYFPVKETVFYNIDAISGDLRWARLNVINEILNNKKKKIII
TSIDSFIATYAPHKLFTKYSMTIKQGTEINFNEISSELIESGYERVEIVESKGQFSVRGG
ILDIFPTCSTYPYRVELFGDEIESIRTFNAESQRSIGKVKSFKIFPAKEIIVSEESMNKA
KELILDEFKKISSNNKEKERIEKLETVVKSNIESLQENLTFETIDSYLSYFYDETESFFD
YFKNYLFIMNDVKRCKGKLESSYLEFAENFTSFLERGDILPGQEKLLINQDEILDKFESS
DILFFETLNSTEKFLKPFKSIELKQTTLSNYQGQLDILIEDILDKKSKGYKTIILSGTKA
RGERLVDTLRDRGVESSYKDNIEKIQFGEVVITCGNQLKGFEYPEYKLCVISDKEVFGEA
KRKLKPKAKKKKGISKIKSFNELKPGDYVVHVNHGIGVYKGIKQIEVSGHKRDYLDIVYD
KGDKLYVPVDQLDLIQKYIGSEGKSPKITKLGGAEWQKAKAKVRKSINDIAEDLVKLYAT
RSTIKGHKFSKDTQWQRQFEDEFPFEETPDQITSLEEIKKDMESDKVMDRLLCGDVGYGK
TEVALRAAFKAVMDGKQVALLVPTTILAEQHYKNMKKRFSDFPIKIDMISRFRTAKEQKA
TIQRLKEGNVDILVGTHKLVSKDIQFKDLGLLIVDEEQRFGVSQKEKIKNIQKNVDVLTL
SATPIPRTLHMSLTGARDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRDGQVYF
VYNRVEDINEMARYVQELVPECKVTVTHGQMTERQLEKEMISFMDQEANVLVCTTIIETG
IDIPNVNTIIIYNSDKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALK
DFTELGSGFKIAMRDLEIRGAGNIMGSSQHGHMASVGYDLYCRMLEDTIKLIKGEISKEP
IETTVEIKVDAFISENYIEDEIQKIEVYKKIAAIEDVDDYNDIKEELEDRYSKIPDPVHN
LMDIAYIKSIAKKLFIEEIKEMPKEIRFKFANGEDEYKKIFKILMENYKKSVILKFGSEP
YFSFKTQEIKKENKLEFLKEILKKLDN
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaaagggttattagagcccttagaaaatggtattgagttaaagaacatattg
caagctattgaggaaaatacttatccaataggtgtatatggattatctgattcaggaaaa
tcgtatatgatagatggactatttgaaaatattaaaagatctattgttatagttacgcaa
aatgatatggaagctaaaaatctttatgaagatttaattttatatactaatgaggtatat
tattttcctgtaaaagaaacagttttttataatatagatgctatttctggagacttgaga
tgggcaagacttaatgtaataaatgagatattaaataataagaagaaaaaaataataata
acctctatagattcttttatagcgacttatgctccacataaattgtttactaaatatagt
atgactataaaacaaggtactgagattaattttaatgaaatatcttctgaattaattgaa
agtggatatgagagggtggaaattgttgaatctaaaggacaattttctgtaagaggtgga
atattagatatatttccaacatgttcaacttatccttatagagttgaactttttggtgat
gaaatagaatctattagaacatttaatgcagaatcacaaagaagtataggtaaagttaaa
tcatttaaaatatttccagcaaaagagattatagtatctgaagaatcaatgaataaagca
aaagaactaattttagatgaatttaaaaagatttcatcaaataataaggaaaaagaaaga
attgaaaaactagaaactgtagttaaatcaaatatagaatcacttcaagaaaacttaaca
tttgaaacgatagatagttatttatcttatttttatgatgagactgaaagtttttttgat
tattttaagaattatttatttataatgaatgacgttaaaagatgtaaaggaaaattagaa
tcatcttatttagaatttgcagaaaattttacttcatttcttgaaagaggagatatactt
ccaggtcaagaaaaattattaataaatcaagatgaaatattagataaatttgaaagttca
gatatacttttttttgaaacattaaatagtacggaaaaatttttaaaaccttttaaaagt
atagaattaaagcaaacaacgttaagcaattatcaaggtcaattagatatattaatagaa
gatattttagataaaaaatcaaaaggatataaaactataatattatctggtacaaaagct
agaggagaaagattagtagacacactaagagatagaggtgttgaaagttcttataaagat
aacatagaaaaaatacaatttggtgaagttgtaataacttgtggaaatcaactaaaagga
tttgaatatccagaatataagttatgtgttatatccgataaagaagtatttggagaagca
aagagaaaattaaaaccaaaggctaaaaagaaaaaaggtatatctaagataaaaagtttt
aatgagttaaaaccaggagattatgtagtacatgtaaatcatggaataggtgtatataaa
ggcattaaacaaattgaagtatctggtcataaaagagattatttagatattgtatatgat
aaaggtgataaactgtatgttcctgtagatcaactagatttaattcaaaaatacattggt
agtgaaggaaaatcacctaaaatcacaaaacttggtggagctgaatggcaaaaagctaaa
gctaaggttagaaaatctataaatgatattgctgaggatttagtaaaactttatgcaact
agatcaactataaagggacataagtttagtaaagatacacaatggcaaagacaatttgaa
gatgaattcccatttgaagaaacaccagatcaaataacttcattagaagaaataaagaaa
gatatggaatctgataaagttatggatagattactttgtggtgatgttggatatggaaaa
acagaagtagcattaagagctgcttttaaagccgttatggatggaaaacaagttgcactt
ttagttcctacaactattttagctgaacaacattataaaaatatgaaaaagagattttct
gattttcctattaaaatagatatgattagtagatttagaactgcaaaggaacaaaaagcg
actattcaaagattaaaagaaggaaatgtagatattttagttggtactcataaattagta
tcaaaagatatacaatttaaggatttaggactacttatagtagatgaagaacaaagattt
ggagtatctcaaaaagaaaaaattaaaaatatacagaaaaatgtagatgtattaacttta
agtgctactcctattcctagaactcttcatatgtcattaacaggagctagagatatttct
gtaatagaaactcctccagaagaaagatatcctgttcaaacatatgttgtagaacaaaat
gaccagcttataagagatgctatattaagagaaataggaagagatggtcaagtatatttt
gtttataatagagtagaagatataaatgaaatggctagatatgtacaagaattagtgccg
gaatgtaaagttacagttacacatggacaaatgacagaaagacaattagaaaaagaaatg
atttcatttatggatcaagaagctaatgttttagtttgtaccactataatagaaacaggt
attgatattcctaatgtaaatacaataataatttataattcagataaaatgggattatct
caactttatcaattaagaggaagagttggtagatctaatagaattgcatatgcatattta
ctatacacaaaggataaagtattaactgaagtagcagagaaaaggttaaaagcgctaaag
gattttactgaattaggttctggatttaaaatagctatgcgagatttagaaataagagga
gctggaaatattatgggctcatctcaacatggccatatggcctcagtaggttatgatcta
tattgtagaatgttagaagatactattaaattaattaaaggtgagatctctaaagaacct
attgaaaccacagtagaaattaaagttgatgcatttatatctgaaaattatatagaagat
gaaattcaaaagatagaagtatataaaaaaatagctgctatagaagatgtagatgattat
aatgatataaaagaagaattagaagatagatattctaaaattcctgatccagttcacaat
ttaatggatatagcttatataaagagtatagctaaaaagttatttatagaagaaattaaa
gagatgccaaaagaaataagatttaaatttgcaaatggtgaggatgaatataagaaaata
tttaaaattcttatggaaaattataagaaaagtgtaattcttaaatttggaagtgaacca
tatttttcatttaaaacacaagaaattaaaaaagagaataagttagagtttttaaaggaa
attttaaaaaaattagacaattaa
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