Clostridium taeniosporum: BGI42_14105
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Entry
BGI42_14105 CDS
T04957
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ctae
Clostridium taeniosporum
Pathway
ctae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BGI42_14105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctae03019
]
BGI42_14105
03009 Ribosome biogenesis [BR:
ctae03009
]
BGI42_14105
Enzymes [BR:
ctae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BGI42_14105
Messenger RNA biogenesis [BR:
ctae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BGI42_14105
Ribosome biogenesis [BR:
ctae03009
]
Prokaryotic type
rRNA helicases
BGI42_14105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOR24795
UniProt:
A0A1D7XN71
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All DBs
Position
3162089..3163666
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AA seq
525 aa
AA seq
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MNDNKFYSLGLKDTIVKAIEDLGFKSPSQIQEESIPVTLEGFDLIGQAQTGTGKTAAYGC
PILSRLNDTNGIKALILAPTRELAVQVNEEFKKLSKYEKINVLPVYGGESIDRQIKALRR
DNIDIVVGTPGRVLDLTKRKILKLDKIEFLVLDEADEMLNMGFIDDIETIISNTPEERQT
LLFSATMPGPIAKLAKNYMKPDAKHVAIKRSSLTVSKIEQNYFMINNKHRLEALCRLLDL
DNPSSAIIFCRTKRGVDELVQELQAKGYVVEGMHGDMSQVHRLTTLKKFKEGSLNLLIAT
DVAARGIDVDGITHVINYDLPQDVESYVHRIGRTGRANRTGTAYSLVTPKEMSMLKQIQR
VTKSTIKEKPVPTAKEIHNRKFNNIVNEIRETIDGGDFEKFIPSAIELNEAYDPVSIIAS
LMKIKFESESIFEYNTDSLDAPSAKSDVRLFFSVGKRDGLTPKILINYIKDKSRIRPAAI
GKIDLMDNFSFVTIDSDVSSKVLDKCIGGKINRKKVNVEIANKRK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataacaaattttattctttaggtcttaaagacacaattgtaaaagcaatcgaa
gatttaggatttaaaagcccttctcaaatccaagaagaaagcatacctgtaacgttagaa
ggttttgacttaattggtcaagcacaaactggtacaggaaaaactgctgcgtatggttgt
cctatacttagcagattaaatgatacgaacggaattaaagcacttattttagctccaaca
agagagcttgctgtacaagtaaatgaagagtttaaaaaactttcaaaatatgaaaaaata
aatgtattacctgtttatggtggggaatctatagatagacaaattaaagcattaagaaga
gataatattgatattgttgttggaactcctggaagagttctagatcttacaaaaagaaaa
atacttaaattagataagatagaattcttagtattagatgaagctgatgaaatgcttaat
atgggattcattgatgatattgaaactataataagtaatacaccagaagaaagacaaact
ttattattttctgctacaatgcctggtccaatagctaaattagctaaaaattatatgaaa
ccagatgcaaaacacgttgcaataaaaagaagttctcttacagtttctaaaatagaacaa
aattattttatgattaataacaaacatagacttgaagcactttgtagattattagattta
gataacccttcttctgctataatcttctgtagaactaaaagaggtgttgatgagttagtt
caagaacttcaagctaaaggttatgtagttgagggtatgcatggtgatatgtctcaagtt
cacagattaactactttaaagaaatttaaagaaggttcattgaatttacttatagcaact
gatgtagctgctagaggtatagatgttgatggtattacccatgtaataaattatgattta
ccacaagacgtagaatcatacgttcatagaatcggaagaactggtagagcaaatagaact
ggtacagcttattctttagtaactccaaaggaaatgagtatgcttaaacaaattcaaaga
gtaactaagagtacaataaaagaaaaacctgttccaaccgctaaagaaatacataataga
aaatttaataatattgttaatgaaattagagaaactattgatggtggagattttgaaaaa
ttcattccaagtgctatagaactaaatgaagcttatgatcctgtttctataatagcatct
ttaatgaaaataaaatttgaaagtgaaagcatatttgaatataatactgatagcttagat
gcaccaagtgcaaaaagtgatgtacgtttattcttctctgttggaaaaagagatggctta
actccaaaaatattaataaattatattaaagataagagcagaataagacctgctgctata
ggtaagatagatcttatggataacttctcatttgtaactatagattcagatgtttcttct
aaagttttagataaatgtatcggtggaaaaattaatagaaaaaaagttaatgttgaaata
gctaataaaagaaaataa
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